Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00173
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   2.3  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   2.3  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.1  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   7.1  

>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +2

Query: 80  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSYN 253
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWN 368


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = +2

Query: 80  DYDTNEDLLYAYSPIPYFGMYHLVKIPIDRGLVHHVDYWGEGKVTNLDKIRGFPRSYN 253
           ++ T ++ + A+ P+ Y G + L  +P D+  +H+ D  G    T+      F   +N
Sbjct: 311 EFGTWDNGIKAFIPMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWN 368


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +2

Query: 272 SSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLSGALQTSPGLST 445
           +S   TT  S  PTG  S L T  T T+P TS ++ S  +P     S        P  ST
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST 227



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 245 SYNGTNS--LRSSVRATTRESKYPTGSPSCLWT--TATLPVTSETTASKLLPSARGRSLS 412
           S   TNS  L ++  + T  +  PTG  S L T  T T+P TS ++ S  +P     S  
Sbjct: 213 SSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTD 272

Query: 413 GALQTSPGLST 445
                 P  ST
Sbjct: 273 TNSSPLPTTST 283


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 168 LSIGIFTRWYIPK*GIGEYAYNR 100
           LSI  F +WY+    I E+ Y R
Sbjct: 13  LSISFFLQWYLANTWIAEFLYRR 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,850
Number of Sequences: 5004
Number of extensions: 58979
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)