Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00173
         (796 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.5  
SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)                  29   3.3  
SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   5.7  

>SB_5064| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 23/82 (28%), Positives = 35/82 (42%)
 Frame = +2

Query: 209 VTNLDKIRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLP 388
           V +L+     P S+ G +   S + A  ++SK             T P+T   T     P
Sbjct: 260 VLSLNLKMDLPESFEGPSPASSPMAAPAKKSK----------ENGTNPLTLRNTVDSSSP 309

Query: 389 SARGRSLSGALQTSPGLSTRPK 454
            + GRS SGA+++S   S   K
Sbjct: 310 VSGGRSYSGAIKSSLSSSVNSK 331


>SB_34069| Best HMM Match : ARID (HMM E-Value=4.8e-14)
          Length = 1774

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +2

Query: 227  IRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRS 406
            I G P S   +NS ++S  ATTR++  PT   S    +   P T+ +T  +   +A+  +
Sbjct: 935  INGAPVSKT-SNSTQNSTEATTRKTGTPTSKTSYSKQSRAEPSTTYSTCQQ-ASTAQASA 992

Query: 407  LSGAL--QTSPG 436
            ++G++  +TS G
Sbjct: 993  INGSITSKTSTG 1004


>SB_14296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +2

Query: 245 SYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTS-ETTASKLLPSARGRSLSGAL 421
           +YN T  +    + TT  S   T   +   TTA+L  T+ ETT + L  +A   + +  L
Sbjct: 40  TYNYTIKISEKRKKTTTASLATTAPET---TTASLVTTAPETTTASLATTAPETTTASFL 96

Query: 422 QTSPGLSTRPK 454
            T+P  +T P+
Sbjct: 97  TTAPEATTAPE 107


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 281 RATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRPK 454
           +ATT  +   T +P  + T    P+TS  T++  +   R         ++ G STR K
Sbjct: 380 QATTTAATTSTAAPGNITTPTKGPITSNNTSTPTMSGGRKMPAKEPTTSTTGHSTRSK 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,443,501
Number of Sequences: 59808
Number of extensions: 468275
Number of successful extensions: 1347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1345
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)