Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00173
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 31 0.72
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical ... 29 2.9
U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 29 5.1
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 29 5.1
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 6.7
U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical p... 28 6.7
AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle... 28 6.7
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so... 28 6.7
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 28 8.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 28 8.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 28 8.9
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 31.5 bits (68), Expect = 0.72
Identities = 19/62 (30%), Positives = 34/62 (54%)
Frame = +2
Query: 212 TNLDKIRGFPRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 391
T+ +R + S R+S RA + ++ PTG+P+ T PVT+ T++S + P+
Sbjct: 152 TSTPVVRNILQQLTTPRSARTSTRAASG-NRTPTGTPNM--TRNVRPVTNRTSSSNVSPA 208
Query: 392 AR 397
A+
Sbjct: 209 AQ 210
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +2
Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSGALQTSPGLST 445
SS +TT + T +PS T T+P T+ + + R +G L TS + T
Sbjct: 339 SSTTSTTTTTTTTTETPSTTVITTTIPSTTSEPEATIDVKTRDSKEDTNGVLPTSSAIET 398
Query: 446 RPKDRRC 466
P C
Sbjct: 399 PPYPENC 405
>AL132904-6|CAD91706.2| 326|Caenorhabditis elegans Hypothetical
protein Y111B2A.9b protein.
Length = 326
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +1
Query: 112 VLPNTLLRYVPPREDPDRQRAGTPCRLL 195
V P+ L+ PP DP QR+GTP LL
Sbjct: 4 VSPSNLVFPPPPSPDPYTQRSGTPSALL 31
>U80446-4|AAB37804.1| 443|Caenorhabditis elegans Hypothetical
protein F56A3.2 protein.
Length = 443
Score = 29.1 bits (62), Expect = 3.8
Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Frame = +2
Query: 227 IRGFPRSYNGTNSLRSSVRAT-----TRESKYPTGSPSCLWTTATLPVTSETTASKLLPS 391
I G PRS++G +R S A+ T + P + + T + P S SK S
Sbjct: 24 IEGIPRSFSGDKKIRFSFGASNMSQDTTQEIIPEDTDTVPLTIPSTPALSGKFDSKTPKS 83
Query: 392 ARGRSLSGALQTS--PGLSTRPKDRRCLRIF*K-F*RHSKSRRELGKNGLYYGAG 547
R RS+S + T ++ P ++ C K + H S E G +G GAG
Sbjct: 84 VRRRSVSMSCFTPIVETINQPPTNQACSSFLQKEYNFHDLSSDEEGGDG---GAG 135
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 242 RSYNGTNSLR-SSVRATTRESKY---PTGSPSCLWTTATLPVTSETTASKLLPSARGRSL 409
RS N + R SS+R+T+ + P + S ATLP T+ + S++ S+ S
Sbjct: 1364 RSVNEIETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSA 1423
Query: 410 SGALQTSPGLST 445
S + +SP ++
Sbjct: 1424 SNSGTSSPAATS 1435
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 28.7 bits (61), Expect = 5.1
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = +2
Query: 242 RSYNGTNSLR-SSVRATTRESKY---PTGSPSCLWTTATLPVTSETTASKLLPSARGRSL 409
RS N + R SS+R+T+ + P + S ATLP T+ + S++ S+ S
Sbjct: 1364 RSVNEIETNRPSSLRSTSNSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSA 1423
Query: 410 SGALQTSPGLST 445
S + +SP ++
Sbjct: 1424 SNSGTSSPAATS 1435
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/66 (25%), Positives = 27/66 (40%)
Frame = +2
Query: 257 TNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPG 436
T + ++ TT + T +P+ TT T P T+ TTA + + T
Sbjct: 255 TTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTT 314
Query: 437 LSTRPK 454
+T PK
Sbjct: 315 TTTTPK 320
>U23511-13|AAC46800.1| 770|Caenorhabditis elegans Hypothetical
protein C32D5.11 protein.
Length = 770
Score = 28.3 bits (60), Expect = 6.7
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Frame = +2
Query: 242 RSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG--RSLSG 415
R+Y+ VR T E P + TT TLP++ + T S+ + R R L
Sbjct: 486 RAYHMMRDRDVRVRYPTTEEPVPVEPVTFGQTTRTLPISQQPTTSRSHMTLRSAMRRLDS 545
Query: 416 ALQTS---PGLSTRPKDRR 463
T P + +RP+ RR
Sbjct: 546 DRPTDEEIPPIESRPQTRR 564
>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucleotide
exchange factorfor RAS protein.
Length = 1413
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 239 PRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG 400
PRS S S+ TT+ P S + +TAT P T TT + PS+ G
Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326
>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
homolog protein 1 protein.
Length = 1493
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 239 PRSYNGTNSLRSSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARG 400
PRS S S+ TT+ P S + +TAT P T TT + PS+ G
Sbjct: 1276 PRSSRANQSNSVSLPPTTQAPMPPAPKSSGMMSTATSPTTLTTTTT---PSSAG 1326
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 452 KDRR 463
RR
Sbjct: 2372 PPRR 2375
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 452 KDRR 463
RR
Sbjct: 2372 PPRR 2375
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +2
Query: 272 SSVRATTRESKYPTGSPSCLWTTATLPVTSETTASKLLPSARGRSLSGALQTSPGLSTRP 451
S+ R +TR S T S T T+ + +T + + P +GRSLS + + R
Sbjct: 2313 STPRGSTRSSNLTTSQDSQATTKMTVS-SEDTIEAPIAPPRKGRSLSRDAERLLEIQPRA 2371
Query: 452 KDRR 463
RR
Sbjct: 2372 PPRR 2375
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,632
Number of Sequences: 27780
Number of extensions: 344073
Number of successful extensions: 1037
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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