Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00173
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10830.1 68414.m01244 sodium symporter-related contains five ...    30   2.0  
At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family pr...    29   2.7  
At1g19680.1 68414.m02453 expressed protein                             29   4.7  

>At1g10830.1 68414.m01244 sodium symporter-related contains five
           transmembrane domains; Interpro IPR001991
           Sodium:dicarboxylate symporter; EST gb|F13926 comes from
           this gene
          Length = 367

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 642 KLYKWLLIDVASAKTIFVLNAVWVFKSAG 556
           KL  W+   V     +F+LN VW+  S G
Sbjct: 92  KLVSWVYFGVVLGVVLFILNVVWIDNSTG 120


>At1g61660.2 68414.m06950 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 347

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 557 PADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYINAVKTVRSL-VDNQGSDVCRDVVS 733
           P+D      F   +   D +S  NHL + +T  D  N V   R    D+ GS V  D   
Sbjct: 29  PSDHFLSPCFGAAITSNDFSSQENHLKSRMTCTDNNNIVFGQREADSDSGGSTVTMDSTL 88

Query: 734 RLVSQGIKNACRSRTN 781
           +++  G  + C S  N
Sbjct: 89  QMMGLGFSSNCSSDWN 104


>At1g61660.1 68414.m06949 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 393

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +2

Query: 557 PADLKTQTAFSTKMVFADATSINNHLYNLVTGGDYINAVKTVRSL-VDNQGSDVCRDVVS 733
           P+D      F   +   D +S  NHL + +T  D  N V   R    D+ GS V  D   
Sbjct: 29  PSDHFLSPCFGAAITSNDFSSQENHLKSRMTCTDNNNIVFGQREADSDSGGSTVTMDSTL 88

Query: 734 RLVSQGIKNACRSRTN 781
           +++  G  + C S  N
Sbjct: 89  QMMGLGFSSNCSSDWN 104


>At1g19680.1 68414.m02453 expressed protein
          Length = 444

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 115 LPNTLLRYVPPREDPDRQRAGTPCRLLGRRKSD 213
           LP+     +PPR  P R+  G+P + L R+ SD
Sbjct: 148 LPSAHTHSLPPRSTPSRRARGSPGQQLFRQVSD 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,008,754
Number of Sequences: 28952
Number of extensions: 326079
Number of successful extensions: 901
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)