Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00172
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    33   0.036
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    30   0.33 
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    29   0.77 
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    29   1.0  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    28   1.8  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    27   4.1  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    25   9.4  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   9.4  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   9.4  

>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 175 ATVHRVVQDLVRFDVTEFRNQHVFGQKRLLPVVVPVASQ--CALRVELVYGRVGQLEGIV 2
           A+ +R+V   +  DVTE R  HV GQ    P  +   SQ  CA  V  + G++G +  ++
Sbjct: 388 ASEYRIVMSCIVGDVTEKRALHVQGQSYWAPANIGPYSQSICANGVVFISGQIGLIPSVM 447


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -2

Query: 751 VRVSSSSRGTCARMRFSVRPQNPILWQTPFAPNSS 647
           V  S+SS    A+   S  P NP  WQ P AP S+
Sbjct: 416 VSSSTSSPAPWAKPASSAAPSNPAPWQQPAAPQSA 450


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +2

Query: 23  HSSIDKFHAKRTLRGDRNNHRKKS 94
           HSS  + H++R+ R DRNN R+++
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERT 216


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 41  FHAKRTLR-GDRNNHRKKSLLPKHMLVSEFSDVETNEILDDT 163
           +H+    R  + +N+R  SL+ K M VSE    E   I+DD+
Sbjct: 25  YHSDGLARYANNSNYRNDSLIRKEMFVSELVLKEVQRIVDDS 66


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 211 SLRIRPEGNRRPNKSKHNDDEIKKAVH 291
           S+R   +   RP KSKH DD++   VH
Sbjct: 428 SIRGVKDAAMRPPKSKHIDDDLSSTVH 454


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 180 TRRPFTVSSRISFVSTSLNSETSMCLGRSDFFLWLFLSPLNV 55
           T +P+T  S +S   T L S   +CL RSD F  + +  L++
Sbjct: 347 TGQPWT--STLSVTQTDLASVLEICLQRSDPFTKIIIDELSI 386


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 304  HMPKSVSAECDQFVEKYADLVISLLAQELDPSE 402
            HM  +  A+C +F+ KY D+ I     E++ SE
Sbjct: 2034 HMDNAHLAKCAEFINKYPDIDIDF---EIEDSE 2063


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 609 MLEVYGESIIHLIEEFGAKGV 671
           + EV GE+++ LI+ +G +GV
Sbjct: 165 VFEVLGENLLSLIQSYGHRGV 185


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 781 SIYIYIEMEQVRVSSSSRGTCARMRFSVRPQNPILWQT 668
           ++Y ++ ++   +SSS     A++ FSVR +  I W T
Sbjct: 200 AVYDHVRIDGYTISSSV--IAAKLSFSVRAKKKIKWAT 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,071,469
Number of Sequences: 5004
Number of extensions: 60309
Number of successful extensions: 229
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)