Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00172
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0273 + 2115257-2115589,2115706-2115766,2115876-2115970,211... 41 0.001
01_02_0039 - 10490522-10490606,10490674-10490810,10491107-104912... 38 0.009
05_07_0145 + 28012268-28012624,28012734-28012794,28013758-280138... 37 0.021
05_03_0566 - 15521494-15521511,15521550-15521747,15521856-155220... 35 0.065
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62... 34 0.11
10_08_0019 - 14167952-14171059 33 0.26
01_05_0795 + 25287449-25287967,25288078-25288138,25288640-252887... 33 0.26
01_06_0158 - 27079262-27079346,27079662-27079750,27080540-270806... 32 0.46
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 31 1.4
11_06_0606 + 25432471-25432517,25433098-25433173,25433272-254334... 29 5.6
08_01_0433 + 3794440-3794948,3795696-3796707 28 7.4
07_03_1323 + 25813770-25814006,25814147-25814287,25814465-258145... 28 7.4
12_01_1080 + 11241590-11241625,11241723-11242018,11242113-112422... 28 9.8
03_05_0828 - 28021095-28021694 28 9.8
>05_01_0273 +
2115257-2115589,2115706-2115766,2115876-2115970,
2116072-2116184,2116278-2116551,2116923-2117036,
2117169-2117233,2117325-2117466,2117547-2117666,
2118153-2118241,2118349-2118433
Length = 496
Score = 40.7 bits (91), Expect = 0.001
Identities = 13/36 (36%), Positives = 25/36 (69%)
Frame = +1
Query: 319 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 426
+S EC + V +Y +++++LL + DP +VC ++ LC
Sbjct: 308 ISTECKEVVSEYGEMILNLLIAQTDPQKVCSQVGLC 343
>01_02_0039 -
10490522-10490606,10490674-10490810,10491107-10491248,
10491355-10491419,10491528-10491641,10491846-10492119,
10492215-10492327,10492405-10492499,10492602-10492662,
10492774-10493103
Length = 471
Score = 37.9 bits (84), Expect = 0.009
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 319 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 426
VS EC Q V Y D+++ +L + P ++C ++ LC
Sbjct: 307 VSMECKQVVRDYGDMILEMLIAQASPMKLCSQIGLC 342
>05_07_0145 +
28012268-28012624,28012734-28012794,28013758-28013852,
28013944-28014056,28014436-28014604,28014677-28014716,
28014797-28014861,28015485-28015598,28015687-28015751,
28015927-28016083,28016167-28016286,28016447-28016535,
28016631-28016715
Length = 509
Score = 36.7 bits (81), Expect = 0.021
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 319 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 426
VS EC V +Y ++ LL E PS++C ++ LC
Sbjct: 316 VSQECKTVVSQYGQQILDLLLAETQPSKICSQVGLC 351
>05_03_0566 -
15521494-15521511,15521550-15521747,15521856-15522037,
15522643-15522721
Length = 158
Score = 35.1 bits (77), Expect = 0.065
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 271 EIKKAVHGICKHMPKSVSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 426
EI +H C P S EC + V+ Y L + + L P E CE + LC
Sbjct: 69 EIIATLHQACSKFP-SFKLECTKLVDYYVSLFFTKVTS-LSPEEFCESVSLC 118
>12_01_0076 +
627796-627877,628706-628944,629129-629326,629415-629474,
629596-629739,631700-631864,632636-632734,633114-633182,
633274-633370,633994-634085,635021-635152,635446-635526,
636284-636400,636497-636598
Length = 558
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +1
Query: 256 KHNDDEIKKAVHGICKHMPKSVSAECDQFVEKYADLVISLLAQELDPSEVCEELKLCK 429
K D+I +H C S +C + ++ YA LV + +A E+ P E C++ LC+
Sbjct: 84 KQIQDKIMTILHDTCSQT-FSFEQKCLETMDSYATLVFAKIA-EIKPDEFCKQYGLCR 139
>10_08_0019 - 14167952-14171059
Length = 1035
Score = 33.1 bits (72), Expect = 0.26
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Frame = -1
Query: 719 RTYAVFGPTTKSDPLADALRAKLFDEVNDAFTVNLQHCVTLSVVFGGQKSTRLLDDVHD- 543
R FG T P ++D + D F + L C +S+ F G K + D +D
Sbjct: 141 RRKKAFGSNTYPKPKPKGFFRHVWDALADVFLIVLLVCAAVSLAF-GIKEHGIKDGWYDG 199
Query: 542 VAVELLVFEDLLTAITTVSQTAQSR 468
V++ L VF L+ A++ VS +Q +
Sbjct: 200 VSIFLAVF--LVAAVSAVSNHSQGK 222
>01_05_0795 +
25287449-25287967,25288078-25288138,25288640-25288734,
25288827-25288939,25289480-25289648,25289777-25289816,
25289906-25289970,25290150-25290263,25290398-25290462,
25290572-25290725,25290798-25290914,25292489-25292545
Length = 522
Score = 33.1 bits (72), Expect = 0.26
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 328 ECDQFVEKYADLVISLLAQELDPSEVCEELKLCKPE 435
EC Q V ++ ++ LL + P++VC ++ LCK +
Sbjct: 373 ECKQVVARHGHEMLELLQDKTPPAQVCSKIGLCKSD 408
>01_06_0158 -
27079262-27079346,27079662-27079750,27080540-27080659,
27080738-27080894,27081167-27081231,27081323-27081436,
27082109-27082178,27082412-27082642,27082963-27083039,
27083143-27083237,27084514-27084574,27084678-27085073
Length = 519
Score = 32.3 bits (70), Expect = 0.46
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 319 VSAECDQFVEKYADLVISLLAQELDPSEVCEELKLC 426
VS EC V +Y ++ L E P++VC + LC
Sbjct: 326 VSQECKAVVSQYGQQILDQLRAETKPAKVCSSVGLC 361
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Frame = +2
Query: 521 KREARPQH--RAHHREVVWTFARQIQRSVLRNAGG-LR*KHHSPHRRVWREGRLP----E 679
+R P H ++++ V +A+Q + + AG + K+H+P R W R P E
Sbjct: 6 RRNEYPHHLGSTNYQQAVKKWAKQDEE--MEKAGKPVPMKNHNPRSRNWVRARTPAFTPE 63
Query: 680 DRILWSDRKPHTCACTARRGTNAY 751
+++ D+K H AR N Y
Sbjct: 64 GDVVFKDQKLHEARAAARDECNIY 87
>11_06_0606 +
25432471-25432517,25433098-25433173,25433272-25433448,
25433576-25433653,25433749-25433853,25434042-25434108,
25434219-25434280,25434371-25434510,25434717-25434843,
25434917-25435031,25435220-25435308,25435699-25435782,
25435961-25436737
Length = 647
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -1
Query: 593 VVFGGQKSTRLLDDVHDVAVELLVFEDLLT 504
++FGGQ ++ L+DVH + E +V+ + T
Sbjct: 272 LIFGGQSKSKTLNDVHALDFETMVWSRVKT 301
>08_01_0433 + 3794440-3794948,3795696-3796707
Length = 506
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -1
Query: 227 GRIRKEHRRCSETCARRGDRSPCRPGSRS 141
GRIR+ C RRG R C PG RS
Sbjct: 11 GRIRRRRHALRRACWRRGGR--CEPGWRS 37
>07_03_1323 +
25813770-25814006,25814147-25814287,25814465-25814536,
25815022-25815135,25815431-25815484,25815644-25815745,
25815830-25815907,25816113-25816182,25816577-25816647,
25816764-25816856,25817306-25817374
Length = 366
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 268 DEIKKAVHGICKHMPKS-VSAECDQFVEKYADLV 366
DE+++AV G+ KH P + VS C ++K D V
Sbjct: 125 DEMREAVRGVAKHFPTAIVSGRC---IDKVFDFV 155
>12_01_1080 + 11241590-11241625,11241723-11242018,11242113-11242269,
11242381-11242449,11242551-11243480,11243868-11243906,
11244414-11244478,11244663-11244768,11244850-11245050,
11247001-11247201,11247756-11247779,11249425-11249586,
11249676-11249915,11250267-11250479,11250618-11250968,
11251041-11251193,11251649-11251858,11252049-11252267,
11252365-11252482,11252879-11253828,11254023-11254220,
11254294-11254553,11255316-11255505,11255817-11256169,
11258278-11258386,11258466-11258615,11258748-11258844,
11259315-11259415
Length = 2065
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +1
Query: 352 YADLVISLLAQELDPSEVCEELKLCK 429
Y L++S LAQE+ ++VCE K+ +
Sbjct: 1141 YVALMLSRLAQEIPVTDVCEAFKVAR 1166
>03_05_0828 - 28021095-28021694
Length = 199
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 227 GRIRKEHRRCSETCARRGDRSPCRPGS 147
G+++ RRCS ARRGDR R GS
Sbjct: 81 GQVKGRPRRCSG--ARRGDRPAARAGS 105
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,513,343
Number of Sequences: 37544
Number of extensions: 419011
Number of successful extensions: 1381
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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