Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00171
         (797 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)             148   4e-36
SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)         100   1e-21
SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)         31   0.82 
SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   1.1  
SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   1.1  
SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               31   1.1  
SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)                31   1.1  
SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   1.1  
SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)                      30   2.5  
SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)                   28   7.6  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_12441| Best HMM Match : Ribosomal_L18p (HMM E-Value=0)
          Length = 328

 Score =  148 bits (359), Expect = 4e-36
 Identities = 67/96 (69%), Positives = 81/96 (84%)
 Frame = +2

Query: 509 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 688
           GA+KGAVDGGL +PHS+KRFPGYD+ESK F+AEVHR HIFG HVAEYMRSL ++DE+S+K
Sbjct: 193 GALKGAVDGGLEIPHSMKRFPGYDSESKDFSAEVHRNHIFGKHVAEYMRSLAEEDEESYK 252

Query: 689 RQFSKYIKLGVTADAIEAIYKKAHEPSVRIHPTRRK 796
           RQFS YIK GV AD+IE IYK AH+ ++R  P  +K
Sbjct: 253 RQFSAYIKNGVDADSIEGIYKAAHQ-AIRADPVHKK 287



 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 45/81 (55%), Positives = 50/81 (61%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AY+HELP +GVKVGLTNYAAAY TG                          EYNVE VD
Sbjct: 109 SAYAHELPNFGVKVGLTNYAAAYCTGLLLARRLLTMLNLHEIYTGTDDVNGDEYNVESVD 168

Query: 438 NGPGAFRCYLDVGLARTTTGA 500
             PGAFRC+LDVGLART+TGA
Sbjct: 169 GSPGAFRCFLDVGLARTSTGA 189



 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 32/42 (76%), Positives = 38/42 (90%)
 Frame = +1

Query: 94  RRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQ 219
           RR +GKTDYYARKRL+ QDKNKYNTPKYR +VR++NKD+ CQ
Sbjct: 17  RRSQGKTDYYARKRLITQDKNKYNTPKYRFVVRITNKDIICQ 58


>SB_35225| Best HMM Match : Ribosomal_L18p (HMM E-Value=4e-30)
          Length = 113

 Score =  100 bits (240), Expect = 1e-21
 Identities = 48/82 (58%), Positives = 52/82 (63%)
 Frame = +3

Query: 255 CAAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPV 434
           CAAY+HELPRYGVKVGLTNYAAAY TG                          EYNVE +
Sbjct: 13  CAAYAHELPRYGVKVGLTNYAAAYCTGLLLARRLLTKLNLHEIYTGTEEVNGDEYNVESI 72

Query: 435 DNGPGAFRCYLDVGLARTTTGA 500
           D  PGAFRC+LDVGLART+TGA
Sbjct: 73  DGSPGAFRCFLDVGLARTSTGA 94



 Score = 32.7 bits (71), Expect = 0.35
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 509 GAMKGAVDGGLNVPH 553
           GA+KGAVDGGL +PH
Sbjct: 98  GALKGAVDGGLEIPH 112


>SB_25615| Best HMM Match : Peptidase_A17 (HMM E-Value=4.5e-10)
          Length = 475

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -2

Query: 706 VLAELSLERILIILFKTSHVFSNMQTKDVSPVYFSIEL--FGFCIIARESFDGMRNIEAT 533
           VLAE+ +E+     F        +  +    V +++E   FGF +   E  D MR + +T
Sbjct: 329 VLAEVPIEKRAAPTFDLD--LDELPVERALGVRWNVETDTFGFKVSNTEKADTMRGVLST 386

Query: 532 VNSTLHSSKTRAPVVVRAK 476
           ++S        APV++R K
Sbjct: 387 ISSVFDPLNFAAPVIMRGK 405


>SB_56909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 564 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 604


>SB_59374| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_46324| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 266

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_44075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 43  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 83


>SB_19321| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 780

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598 ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
           + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 212 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 252


>SB_5393| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1244

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598  ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 881  DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 921


>SB_616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1515

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 598  ELFGFCIIARESFDGMRNIEATVNSTLHSSKTRAPVVVRAK 476
            + FGF +   E  D MR + +T++S        APV++R K
Sbjct: 1159 DTFGFKVSNTEKADTMRGVLSTISSVFDPLNFAAPVIMRGK 1199


>SB_56509| Best HMM Match : Ebp2 (HMM E-Value=2.1)
          Length = 298

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 578 DAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIK 712
           D+  K+ NAE+ RA      +++ ++S   D+E +  R+F  + K
Sbjct: 157 DSSVKRGNAEIRRARFRATTISQVVQSFRSDEERNSVRKFIAHYK 201


>SB_43459| Best HMM Match : VWA (HMM E-Value=1.8e-23)
          Length = 232

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 117 ISFPFTTPLEFYLVPLEVLFVLHNFNESHILNLSYK 10
           ISFPFTT  E Y    +V F+    N    LNL+ +
Sbjct: 119 ISFPFTTRKEAYRQLSKVPFIAGTTNTQEALNLAQR 154


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/73 (20%), Positives = 39/73 (53%)
 Frame = +1

Query: 43  KVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 222
           K +K+ Q+     V+F+  +E + D + R + ++QD N   T +  ++++  N+    ++
Sbjct: 400 KTMKSMQFKNEELVRFQYNQEDQVDDFKRLKKLIQD-NGLPTIEQVIVLQRQNESYREEL 458

Query: 223 AYSRIEGDHIVAL 261
              R E + ++++
Sbjct: 459 MNERKEKERLLSI 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,174,667
Number of Sequences: 59808
Number of extensions: 519075
Number of successful extensions: 1471
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)