Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00171
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) riboso...   108   4e-24
At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S...   107   6e-24
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa...    33   0.29 
At2g36610.1 68415.m04488 homeobox-leucine zipper family protein ...    31   0.89 
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr...    28   6.2  
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr...    28   6.2  

>At5g39740.1 68418.m04813 60S ribosomal protein L5 (RPL5B) ribosomal
           protein L5, rice
          Length = 301

 Score =  108 bits (260), Expect = 4e-24
 Identities = 47/96 (48%), Positives = 70/96 (72%)
 Frame = +2

Query: 509 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 688
           GA+KGA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQ 219

Query: 689 RQFSKYIKLGVTADAIEAIYKKAHEPSVRIHPTRRK 796
             FS YIK GV A++IE +YKK H  ++R  P  +K
Sbjct: 220 THFSAYIKKGVEAESIEEMYKKVH-AAIRAEPNHKK 254



 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +1

Query: 31  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 210
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 211 TCQVAYSRIEGDHIVA 258
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 36/80 (45%), Positives = 44/80 (55%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 438 NGPGAFRCYLDVGLARTTTG 497
           +    FR  LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155


>At3g25520.1 68416.m03173 60S ribosomal protein L5 similar to 60S
           ribosomal protein L5 GB:P49625 from [Oryza sativa]
          Length = 301

 Score =  107 bits (258), Expect = 6e-24
 Identities = 47/96 (48%), Positives = 70/96 (72%)
 Frame = +2

Query: 509 GAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFK 688
           GA+KGA+DGGL++PHS KRF G+  E+K+ +AE+HR +I+G HV+ YM+ L +D+ +  +
Sbjct: 160 GALKGALDGGLDIPHSDKRFAGFHKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQ 219

Query: 689 RQFSKYIKLGVTADAIEAIYKKAHEPSVRIHPTRRK 796
             FS YIK GV A++IE +YKK H  ++R  P  +K
Sbjct: 220 THFSAYIKKGVEAESIEELYKKVH-AAIRADPNPKK 254



 Score =  107 bits (256), Expect = 1e-23
 Identities = 48/76 (63%), Positives = 58/76 (76%)
 Frame = +1

Query: 31  MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDV 210
           M FVK  K+  YFKRYQVKF+RRR+GKTDY AR RL+ QDKNKYNTPKYR +VR +NKD+
Sbjct: 1   MVFVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI 60

Query: 211 TCQVAYSRIEGDHIVA 258
             Q+  + I GD + A
Sbjct: 61  VAQIVSASIAGDIVKA 76



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 36/80 (45%), Positives = 44/80 (55%)
 Frame = +3

Query: 258 AAYSHELPRYGVKVGLTNYAAAYSTGXXXXXXXXXXXXXXXXXXXXXXXXXXEYNVEPVD 437
           +AY+HELP+YG+ VGLTNYAAAY TG                          +++VEP D
Sbjct: 77  SAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDFSVEPTD 136

Query: 438 NGPGAFRCYLDVGLARTTTG 497
           +    FR  LDVGL RTTTG
Sbjct: 137 S-RRPFRALLDVGLIRTTTG 155


>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
           domain-containing protein / RNA recognition motif
           (RRM)-containing protein KIAA0122 gene , Homo sapiens,
           EMBL:HSDKG02; contains Pfam profiles  PF00076: RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF01585: G-patch domain, weak hit to PF00641: Zn-finger
           in Ran binding protein and others
          Length = 1105

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 781 MDPHGWLMGFLVDGFNSICSDS*FYVLAELSLERILIILFKTSHVF 644
           +DP GWL    +DGF S C          L +E +L+IL  T H+F
Sbjct: 650 IDPVGWLYSPAIDGF-SKCYMITIMAAVGLPMETVLMILVITRHLF 694


>At2g36610.1 68415.m04488 homeobox-leucine zipper family protein
           similar to homeobox protein PpHB8 (GP:7415628)
           [Physcomitrella patens]; contains PfamPF00046: Homeobox
           domain
          Length = 185

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +2

Query: 503 CLGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDS 682
           CLG M GA    L+VP ++    GY  ES  FN +  +        +E ++ LE+  ++ 
Sbjct: 35  CLGTMMGAQQDILHVPLAMVE-SGYGEESNSFNGQEKKKKKM---TSEQLKFLERSFQEE 90

Query: 683 FKRQFSKYIKL 715
            K    + +KL
Sbjct: 91  IKLNPDRKMKL 101


>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 302

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 49  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 222
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
           protein contains Pfam domain, PF00010: Helix-loop-helix
           DNA-binding domain
          Length = 304

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/58 (24%), Positives = 32/58 (55%)
 Frame = +1

Query: 49  VKNKQYFKRYQVKFKRRREGKTDYYARKRLVVQDKNKYNTPKYRLIVRLSNKDVTCQV 222
           VKN  + +   ++ KR+ EGKT+   +K++  +D+ +   P  +    +SN + + ++
Sbjct: 79  VKNNGHSRAITLQNKRKPEGKTEKREKKKIKAEDETE---PSMKGKSNMSNTETSSEI 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,361,994
Number of Sequences: 28952
Number of extensions: 348118
Number of successful extensions: 841
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)