Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00170
         (477 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    84   9e-18
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S...    84   9e-18
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.5  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   2.6  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   4.5  
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...    25   7.9  

>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 38/59 (64%), Positives = 47/59 (79%)
 Frame = +2

Query: 89  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS   ++
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQE 75



 Score = 49.2 bits (112), Expect = 3e-07
 Identities = 26/55 (47%), Positives = 34/55 (61%)
 Frame = +1

Query: 250 YQLQXXXXXXXDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQ 414
           ++LQ       D YVPEVS LE D + VD DTKDMLK L ++ I  +++  PA Q
Sbjct: 71  FKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI-PVRVLAPAPQ 124


>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 84.2 bits (199), Expect = 9e-18
 Identities = 38/59 (64%), Positives = 47/59 (79%)
 Frame = +2

Query: 89  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
           IEKYY RLTLDF TNKRI +E+AII +K LRNKIAG+ THLM+R++   VRGIS   ++
Sbjct: 17  IEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQE 75



 Score = 49.6 bits (113), Expect = 2e-07
 Identities = 24/44 (54%), Positives = 29/44 (65%)
 Frame = +1

Query: 250 YQLQXXXXXXXDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 381
           ++LQ       D YVPEVS LE D I VD DTKDMLK L +++I
Sbjct: 71  FKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -1

Query: 177 RGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFL 67
           RG+V + AIS+ ++ F+   S++++ +  +  FA FL
Sbjct: 352 RGIVLIAAISTTMIGFIVYGSIDIMNHIGVSYFACFL 388


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 393 LQAINIVEVQHLQHILGVGVYFDDVMFESRHFWDIVVTPLTLL 265
           L+  NI+E +++  +    +YF+  M  + +FW I   P  +L
Sbjct: 368 LEVKNIIEQRNVTTMENCNLYFNPEMPTTIYFWKIYSAPTWML 410


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 195 PAILFLRGLVGMIAISSHILLFVSK 121
           P I  LRGLV   A   H+L F++K
Sbjct: 457 PIIAQLRGLVNESAPGKHVLTFLNK 481


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 149 EIAIIPTKPLRNKIAGFATHLMRRLRHSQVR 241
           EIA++ TKP  + I G       RL  S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,259
Number of Sequences: 5004
Number of extensions: 31296
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)