Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00170
         (477 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0066 - 537729-538163                                             88   4e-18
10_07_0174 + 13815478-13815903                                         87   5e-18
11_04_0372 + 16915047-16915406,16915493-16916341                       29   1.5  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    28   3.4  
09_02_0460 + 9567656-9567766,9567849-9567949,9568527-9568647,956...    28   4.5  
11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    27   7.8  

>03_01_0066 - 537729-538163
          Length = 144

 Score = 87.8 bits (208), Expect = 4e-18
 Identities = 36/59 (61%), Positives = 51/59 (86%)
 Frame = +2

Query: 89  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR++   VRGIS+  ++
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRRIQRGPVRGISLKLQE 75



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = +1

Query: 286 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQP 405
           ++VP+ SALE D I VD +T DML  L   ++ G+ + QP
Sbjct: 83  DFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV-VRQP 121


>10_07_0174 + 13815478-13815903
          Length = 141

 Score = 87.4 bits (207), Expect = 5e-18
 Identities = 36/59 (61%), Positives = 50/59 (84%)
 Frame = +2

Query: 89  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
           IEKYY+R+TLDF TNK++ EE++I+P+K LRNK+AGF THLMRR++   VRGIS+  ++
Sbjct: 17  IEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRRIQRGPVRGISLKLQE 75



 Score = 33.9 bits (74), Expect = 0.068
 Identities = 17/46 (36%), Positives = 27/46 (58%)
 Frame = +1

Query: 286 NYVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQLTQPATQGGY 423
           ++VPE SALE + I VD +T +ML  L   ++ G++  Q  +   Y
Sbjct: 83  DFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQQEVSAPTY 128


>11_04_0372 + 16915047-16915406,16915493-16916341
          Length = 402

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -1

Query: 327 DDVMFESRHFWDIVVTPLTLLFLKLIEIPRTCECLRRLIKCVAN 196
           DDV  E R  WD++  P+    L +I +    E + +L++ ++N
Sbjct: 300 DDVWNERRDCWDLLCMPMNTTKLCMIVVTTRSEKVAKLVQTMSN 343


>11_04_0364 -
           16791774-16792490,16792545-16793561,16793856-16793920,
           16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -1

Query: 327 DDVMFESRHFWDIVVTPLTLLFLKLIEIPRTCECLRRLIKCVAN 196
           DDV  E R  WD++  P+    L +I +    E + +L++ + N
Sbjct: 252 DDVWNERRDCWDLLCEPMNTAKLCMIIVTTRSERVAKLVQTMPN 295


>09_02_0460 +
           9567656-9567766,9567849-9567949,9568527-9568647,
           9568733-9568792,9569022-9569089,9569469-9569535,
           9569586-9569666,9570152-9570217,9570372-9570410,
           9570527-9570609,9570712-9570823,9570902-9570982,
           9571132-9571290,9571397-9571504,9571570-9571674,
           9571765-9571905,9572007-9572147,9572205-9572426,
           9573617-9573730,9573830-9574045,9574373-9574432,
           9574513-9574626,9574735-9574820,9574904-9575012,
           9575099-9575277,9575357-9575429
          Length = 938

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 22/77 (28%), Positives = 37/77 (48%)
 Frame = +2

Query: 95  KYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRKRSV 274
           + Y  +TL+F         + + P   + NKI GF+ ++   L  +    I+  F+KR  
Sbjct: 154 RLYLEITLEFS--------VFLFPLFVIENKI-GFSNNVNVSLARNLAGEIAQEFQKRQD 204

Query: 275 RGVTTMSQKCLLSNMTS 325
            G+TT S K L+  + S
Sbjct: 205 DGMTTDSLKELVEQIVS 221


>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 342 VGVYFDDVMFESRHFWDIVVTPL 274
           V + FDDV  E   +W++++TP+
Sbjct: 252 VFLVFDDVWNERSDYWELLITPM 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,726,788
Number of Sequences: 37544
Number of extensions: 192619
Number of successful extensions: 520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)