Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00170
(477 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13316| Best HMM Match : Synaptobrevin (HMM E-Value=6.8) 31 0.64
SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20) 28 3.4
SB_53921| Best HMM Match : Viral_P18 (HMM E-Value=2.6) 28 3.4
SB_41082| Best HMM Match : RVT_1 (HMM E-Value=3.1e-24) 28 3.4
SB_36270| Best HMM Match : Viral_P18 (HMM E-Value=4.9) 28 3.4
SB_32345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21) 28 3.4
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31) 28 3.4
SB_23599| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_55213| Best HMM Match : Viral_P18 (HMM E-Value=2.6) 28 3.4
SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20) 28 3.4
SB_43560| Best HMM Match : DUF633 (HMM E-Value=4.4) 28 3.4
SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_40708| Best HMM Match : SRCR (HMM E-Value=0) 27 7.9
>SB_13316| Best HMM Match : Synaptobrevin (HMM E-Value=6.8)
Length = 173
Score = 30.7 bits (66), Expect = 0.64
Identities = 20/74 (27%), Positives = 38/74 (51%)
Frame = -1
Query: 276 LTLLFLKLIEIPRTCECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSKSSVNLV*Y 97
LTLL +KL+++PR R+I C + R + G + +SS +++ S V ++
Sbjct: 105 LTLLPIKLVKLPRVINSRSRIINCRS-------RIINGQVELSSLASRYINISIVIIIII 157
Query: 96 FSIIIFAAFLTVLV 55
III + +++
Sbjct: 158 IIIIIIIIIIIIII 171
>SB_54579| Best HMM Match : RVT_1 (HMM E-Value=2.7e-20)
Length = 308
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 204 IANEICGFATQRGMRLNPSKCRELVINFLK 233
>SB_53921| Best HMM Match : Viral_P18 (HMM E-Value=2.6)
Length = 322
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 103 IANEICGFATQRGMRLNPSKCRELVINFLK 132
>SB_41082| Best HMM Match : RVT_1 (HMM E-Value=3.1e-24)
Length = 308
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 204 IANEICGFATQRGMRLNPSKCRELVINFLK 233
>SB_36270| Best HMM Match : Viral_P18 (HMM E-Value=4.9)
Length = 283
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 103 IANEICGFATQRGMRLNPSKCRELVINFLK 132
>SB_32345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 236
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 103 IANEICGFATQRGMRLNPSKCRELVINFLK 132
>SB_29973| Best HMM Match : RVT_1 (HMM E-Value=5.2e-21)
Length = 499
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 323 IANEICGFATQRGMRLNPSKCRELVINFLK 352
>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
Length = 996
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 381 NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 277
N+ ++ +H++ G D M E++HF W++V P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397
>SB_23599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 284
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 65 IANEICGFATQRGMRLNPSKCRELVINFLK 94
>SB_55213| Best HMM Match : Viral_P18 (HMM E-Value=2.6)
Length = 371
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 103 IANEICGFATQRGMRLNPSKCRELVINFLK 132
>SB_52244| Best HMM Match : RVT_1 (HMM E-Value=9.5e-20)
Length = 523
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 304 IANEICGFATQRGMRLNPSKCRELVINFLK 333
>SB_43560| Best HMM Match : DUF633 (HMM E-Value=4.4)
Length = 284
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 176 LRNKIAGFATHLMRRLRHSQVRGISINFRK 265
+ N+I GFAT RL S+ R + INF K
Sbjct: 65 IANEICGFATQRGMRLNPSKCRELVINFLK 94
>SB_18018| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1040
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +2
Query: 98 YYTRLTLDFDTNKRICEEIAIIPTKPLRNK 187
YY++LT D+D+ K EI I+P+ P+ K
Sbjct: 14 YYSKLTHDYDSGKLQSPEI-ILPSVPVVTK 42
>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
Length = 1976
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -3
Query: 322 CHVREQTLL---GHSCHASHAPLPEVDRDSSHLRV 227
CH+R ++ G+SCH P+ R+S HLR+
Sbjct: 1024 CHLRIYPIIISYGNSCHLRIYPIIISHRNSCHLRI 1058
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,225
Number of Sequences: 59808
Number of extensions: 216678
Number of successful extensions: 534
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 989515521
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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