Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00170
         (477 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    89   1e-18
Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/reti...    27   7.0  
AF025457-12|AAY55849.1|  244|Caenorhabditis elegans Hypothetical...    27   7.0  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/59 (66%), Positives = 48/59 (81%)
 Frame = +2

Query: 89  IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISI  ++
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQE 75



 Score = 36.3 bits (80), Expect = 0.011
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = +1

Query: 253 QLQXXXXXXXDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 375
           +LQ       DNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 72  KLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>Z73899-5|CAA98080.1|  372|Caenorhabditis elegans Hypothetical
           protein ZK829.7 protein.
          Length = 372

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -1

Query: 336 VYFDDVMFESRHFW---DIVVTPLTLLFLKLIEIPRTCECLRRLIKCVANPAILFLRGLV 166
           V++DD  FE        D+  T + ++F   +  PRT   + R +KC+A   +LF+ GL 
Sbjct: 220 VHWDDSEFEEYLIMRTKDVARTGVNVVF-DFVTSPRT---VTRSLKCLAEGGVLFVGGLS 275

Query: 165 GM 160
           G+
Sbjct: 276 GL 277


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 343 TKDMLKMLDFNNINGLQL 396
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>U00052-7|AAK21422.2|  232|Caenorhabditis elegans Fatty acid/retinol
           binding proteinprotein 8 protein.
          Length = 232

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/59 (27%), Positives = 22/59 (37%)
 Frame = +1

Query: 193 WICHTFNEASQTLASARNLYQLQXXXXXXXDNYVPEVSALEHDIIEVDPDTKDMLKMLD 369
           W CH FN A   ++ A+ L Q         + +   V  L     E      + LK LD
Sbjct: 150 WACHIFNNAKSAVSGAKALLQDDSEAAKIEEAFPEAVKLLNSKKFEAYSIIVNNLKPLD 208


>AF025457-12|AAY55849.1|  244|Caenorhabditis elegans Hypothetical
           protein C08E3.14 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 282 TPLTLLFLKLIEIPRTCECLRRLIKCVANPAILF 181
           TPL L  L +I  PRT  C++ L KC A P   F
Sbjct: 3   TPLFLFLLSII--PRTDACIK-LSKCSAKPMRFF 33


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,223,269
Number of Sequences: 27780
Number of extensions: 170405
Number of successful extensions: 521
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)