Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00170
(477 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S ... 89 1e-18
At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S ... 89 1e-18
At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) simi... 89 1e-18
At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B) 89 1e-18
At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A) 89 1e-18
At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1... 30 0.93
At5g40530.2 68418.m04918 expressed protein contains Pfam profile... 29 2.2
At5g40530.1 68418.m04919 expressed protein contains Pfam profile... 29 2.2
At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR... 27 6.6
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH... 27 8.7
>At5g04800.2 68418.m00499 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +2
Query: 89 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+ ++
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQE 75
>At5g04800.1 68418.m00498 40S ribosomal protein S17 (RPS17D) 40S
ribosomal protein S17, Lycopersicon esculentum,
EMBL:AF161704
Length = 141
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +2
Query: 89 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+ ++
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQE 75
>At3g10610.1 68416.m01276 40S ribosomal protein S17 (RPS17C) similar
to 40S ribosomal protein S17 GB:AAD50774 [Lycopersicon
esculentum]
Length = 140
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +2
Query: 89 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+ ++
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQE 75
>At2g05220.1 68415.m00550 40S ribosomal protein S17 (RPS17B)
Length = 140
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +2
Query: 89 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+ ++
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQE 75
>At2g04390.1 68415.m00442 40S ribosomal protein S17 (RPS17A)
Length = 141
Score = 89.0 bits (211), Expect = 1e-18
Identities = 39/59 (66%), Positives = 51/59 (86%)
Frame = +2
Query: 89 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISINFRK 265
IEKYY+R+TLDF TNK+I EE+AIIP+K LRNKIAGF+THLM+R++ VRGIS+ ++
Sbjct: 17 IEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQE 75
>At1g16380.1 68414.m01959 cation/proton exchanger, putative (CHX1)
monovalent cation:proton antiporter family 2 (CPA2)
member, PMID:11500563
Length = 785
Score = 29.9 bits (64), Expect = 0.93
Identities = 27/110 (24%), Positives = 50/110 (45%)
Frame = -1
Query: 342 VGVYFDDVMFESRHFWDIVVTPLTLLFLKLIEIPRTCECLRRLIKCVANPAILFLRGLVG 163
+G F RH+ + +T L KL+ + C L+ + LFL
Sbjct: 308 IGFRFSVNSLTKRHYLVLGMTVALSLLGKLLGVLFACSFLK-----IPKQYWLFLST--- 359
Query: 162 MIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTVLVRTRPMAEVVTALLL 13
M+++ HI L + S++ +F+ ++ F+ LV ++ V+T+LLL
Sbjct: 360 MLSVKGHIGLVLLDSNLMYKKWFTPVVHDMFVAALVIMTLLSGVITSLLL 409
>At5g40530.2 68418.m04918 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 301
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 404 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 297
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g40530.1 68418.m04919 expressed protein contains Pfam profile
PF05148: Protein of unknown function (DUF691)
Length = 287
Score = 28.7 bits (61), Expect = 2.2
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 404 GCVSCRPLILLKSSIFNISLVSGSTSMMSCSRADTS 297
GC R +K+ +F+ LVS + S+++C ++TS
Sbjct: 142 GCGDARIAKSVKNKVFSFDLVSKNPSVIACDMSNTS 177
>At5g48770.1 68418.m06035 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1190
Score = 27.1 bits (57), Expect = 6.6
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = -1
Query: 294 DIVVTPLTLLFLKLIE--IPRTCECLRRLIKCVANPAILFLRGLVGMIAISSHILLFVSK 121
D+V P+T+ FL+L+ C+ L+ +++ N L+ RG + I H+ L S
Sbjct: 933 DMVTMPVTIRFLRLLNTLCLNDCKKLKSMVQLPPNLTSLYARGCTSLEII--HLPLDHSI 990
Query: 120 SSVNL 106
V+L
Sbjct: 991 KHVDL 995
>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
identical to SP|Q9SMV7 DNA mismatch repair protein
MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
thaliana}; GC donor splice site at exon 11
Length = 1109
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 102 IQD*HLILIQIKEYVKKSLSFLPSLLGIKLL 194
+ D +L +IK V+ S S LP+LLG K+L
Sbjct: 635 LPDLERLLGRIKSSVRSSASVLPALLGKKVL 665
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,692,935
Number of Sequences: 28952
Number of extensions: 156983
Number of successful extensions: 406
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 821630280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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