Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00169
(524 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 89 2e-18
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 89 2e-18
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 89 2e-18
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 85 2e-17
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 85 2e-17
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 33 0.12
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 5.8
At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein si... 27 5.8
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 256 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 426
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 74 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 253
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 254 DIRFHWSRLTTTKS 295
D H +L T S
Sbjct: 84 D---HSIKLLTVPS 94
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 256 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 426
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 74 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 253
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 254 DIRFHWSRLTTTKS 295
D H +L T S
Sbjct: 84 D---HSIKLLTVPS 94
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/57 (66%), Positives = 47/57 (82%)
Frame = +1
Query: 256 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 426
H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET AL+++K +L
Sbjct: 85 HSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHL 141
Score = 73.3 bits (172), Expect = 9e-14
Identities = 36/74 (48%), Positives = 52/74 (70%)
Frame = +2
Query: 74 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 253
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 254 DIRFHWSRLTTTKS 295
D H +L T S
Sbjct: 84 D---HSIKLLTVPS 94
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 85.4 bits (202), Expect = 2e-17
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = +1
Query: 256 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 426
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
Score = 70.5 bits (165), Expect = 6e-13
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +2
Query: 26 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 202
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 203 ENCDEAAYKKLVQALCNDIRFHWSRLTTTKS 295
E+C++ Y KLV+ALC D H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 85.4 bits (202), Expect = 2e-17
Identities = 34/57 (59%), Positives = 46/57 (80%)
Frame = +1
Query: 256 HQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKDYL 426
H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KDFGEET AL ++ ++
Sbjct: 85 HEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKDFGEETTALSIVNKHI 141
Score = 70.5 bits (165), Expect = 6e-13
Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Frame = +2
Query: 26 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 202
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 203 ENCDEAAYKKLVQALCNDIRFHWSRLTTTKS 295
E+C++ Y KLV+ALC D H RL T S
Sbjct: 67 EDCNQPDYVKLVKALCAD---HEVRLLTVPS 94
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 33.1 bits (72), Expect = 0.12
Identities = 17/52 (32%), Positives = 30/52 (57%)
Frame = +2
Query: 167 LDKRQAVLCVLAENCDEAAYKKLVQALCNDIRFHWSRLTTTKSLENGLVSAR 322
L RQA++C L+E+C ++Y K VQ N++ ++ + +SL + AR
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINEVGYYVDIDESDRSLRKKVADAR 404
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 191 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 102
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At5g15870.1 68418.m01857 glycosyl hydrolase family 81 protein
similar to beta-glucan-elicitor receptor GI:1752734 from
[Glycine max]
Length = 745
Score = 27.5 bits (58), Expect = 5.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 390 GNSSVGCAQGLPQVVELILRCNANPY 467
G SS+ C G ++ +++ N NPY
Sbjct: 233 GVSSINCGDGFSGIIRIVVLPNPNPY 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,232
Number of Sequences: 28952
Number of extensions: 207635
Number of successful extensions: 630
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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