Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00168
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    33   0.043
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    29   0.71 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    29   0.94 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    27   3.8  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    26   5.0  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    26   5.0  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   5.0  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    25   8.7  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = +3

Query: 504 RDVLPNVNSTI-YHDVPAIINLVDYV----NVGAYDYYTPTRNNKEADYTAPIYTPQNRN 668
           ++++  + ST+ YHD+   IN+V  V     +G Y+YY  T+ NK+       Y   N N
Sbjct: 314 KEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNKKEAEKEVEYIVLNEN 373


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +3

Query: 597 YYTPTRNNKEADYTAPIYTPQNRNPLQNADAA 692
           Y TPT       Y  P YTP  RNP Q+   A
Sbjct: 590 YPTPTMPYIPVGYPVPGYTPYMRNPSQHTSVA 621


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 206 EEPEKYNLLLESQQARMLSLIPECCWLNNMVSMELTSP 319
           E  +   L  ++  +++ +L+PE  W NNM   EL +P
Sbjct: 211 ETEDFLRLRTKASLSKLQALLPEVAWKNNMNQWELLNP 248


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 200 DTEEPEKYNLLLESQQARMLSLIPECCWLNNMVSMELTS 316
           D+ + E  NL+L SQ+     ++PE     N +  EL S
Sbjct: 518 DSSQIENTNLMLSSQRPLSQQIVPEIAAYPNSIRPELLS 556


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 498 LHLRLVDKGLFQFTNKGSETFTVLRFLLIDWRGAECLLNSMP 373
           +H+  +   LFQ T K  +  + L F L +  G EC+L   P
Sbjct: 271 IHVSTLVTPLFQVTEKIGKNTSDLWFALCEIDGLECVLKYRP 312


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 303 IETILFSQQHSGINESIRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 160
           +E+    Q H  IN+  ++C     R    GS+     P+  +TV PG
Sbjct: 848 VESEELPQVHETINQYRKSCETQRSRKSHEGSNDLERQPSSPDTVHPG 895


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +2

Query: 32   THLLYGYAAIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVL 178
            T L  GY A+  D   L  L+ +L I R HD Y  +  +   Y  +  L
Sbjct: 1137 TILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIYL 1185


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = -2

Query: 450 GSETFTVLRFLLIDWRGAECLLNSMPKRSPGRADLLRLNSWELPGEVNSIETILFSQQ 277
           G    TVLRF   +   +  + N + + SPG   +L  NS E   E +   TI   +Q
Sbjct: 17  GKVRSTVLRFSTTNRNASHLIKNELEQISPGIRQMLNSNS-EFLEECSKYYTIAQGKQ 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,067
Number of Sequences: 5004
Number of extensions: 65773
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)