Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00168
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 42 5e-04
04_03_0649 - 18402976-18403220,18403305-18404499 40 0.003
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 30 1.7
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 30 1.7
01_05_0553 + 23185473-23186188,23187096-23187101,23187230-231873... 29 3.9
12_02_0431 - 19000267-19000719 29 5.2
01_06_0179 + 27250706-27251593,27252172-27252462,27252510-272525... 29 5.2
03_01_0436 + 3384526-3385236,3387857-3388720 28 6.9
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 28 6.9
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 256 AFINSGVLLAEQYGFDGIDLAWQFP 330
AFINS + LA GFDG+DLAW+FP
Sbjct: 141 AFINSSIELARANGFDGLDLAWRFP 165
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/29 (55%), Positives = 22/29 (75%)
Frame = +1
Query: 244 ASPYAFINSGVLLAEQYGFDGIDLAWQFP 330
AS AFI + V +A + GFDG+D+AW+FP
Sbjct: 142 ASRAAFIGAAVKVARENGFDGLDVAWRFP 170
Score = 35.9 bits (79), Expect = 0.034
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 567 VDYVNVGAYDYYTPTRNNKEAD-YTAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLS 743
+D+VNV A+ P N A + AP+Y +R +A V WL +G P+ K+V+
Sbjct: 225 LDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMG 281
Query: 744 I 746
I
Sbjct: 282 I 282
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 2 LDLDPALSFCTHLLYGYAAIQPDTYKLVSLNENLDIDRTHDNYRAIT 142
L+LDP H+L Y + TY LV + +D HDNY+ I+
Sbjct: 680 LELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 259 FINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGSLWHGIKKTFGTTPV---DEKESE 429
+I SG ++ Q G D + W+ + + + W W G +KT + + E + +
Sbjct: 454 WITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQDWVGQRKTSIGSQLWWNWEVDDD 513
Query: 430 HREGFTALVRELKQ 471
H G+ LVR+L++
Sbjct: 514 HYAGWNDLVRDLRR 527
>01_05_0553 + 23185473-23186188,23187096-23187101,23187230-23187374,
23187887-23188159,23188275-23188338,23188479-23188744,
23188951-23189045,23189544-23189718,23190669-23191063,
23191830-23191953,23192864-23192959,23193049-23193120,
23194687-23194824,23195369-23195549,23195602-23195963,
23196944-23197386,23197461-23197763,23197857-23198081,
23198260-23198350,23198702-23198779,23198939-23199229,
23199316-23199513,23199681-23200163,23200488-23200562,
23201163-23201324,23201400-23201729,23201816-23201916,
23202477-23202581,23202931-23203162,23203913-23204257,
23204346-23204447,23206010-23206153,23206463-23206551,
23206979-23207061,23207172-23207287,23207824-23207909,
23208461-23208560,23209270-23209335
Length = 2451
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -2
Query: 420 LLIDWRGAECLLNSMPKRSPGRA---DLLRLNSWELPGEVNSIETILFSQQHSGINE 259
LL D R + L++ KR+ G D+ RLNSW L V S+ + Q+ S ++E
Sbjct: 1503 LLPDLRSKQLLVHFFLKRTVGNLSDDDVARLNSWALGLRVLSLLPLPSQQRCSSLHE 1559
>12_02_0431 - 19000267-19000719
Length = 150
Score = 28.7 bits (61), Expect = 5.2
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -2
Query: 621 CCCVSECNNRKRQR 580
CCCVS C R+R+R
Sbjct: 96 CCCVSACGGRRRRR 109
>01_06_0179 +
27250706-27251593,27252172-27252462,27252510-27252575,
27252732-27252871,27254709-27254814,27254898-27254990,
27255398-27255487,27256403-27256525,27256708-27256781,
27256878-27256932,27257087-27257322,27257959-27258088,
27258170-27258272,27258428-27258525,27258973-27259038,
27259252-27259419
Length = 908
Score = 28.7 bits (61), Expect = 5.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 599 LHSDTQQQRS*LHSSYLHPTKSQPTAERRRRCHILA 706
LHS+ ++R L+SS HP S P + R H LA
Sbjct: 88 LHSEPSRRRLLLYSSSGHPIASSPWPPQLPRLHSLA 123
>03_01_0436 + 3384526-3385236,3387857-3388720
Length = 524
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +2
Query: 17 ALSFCTHLLYGYAAIQPDTYKLVSLNENLDIDRTHDNYR--AITSLKAKYPGLTVLLS 184
A+ HLL +A +TY LV EN+ ++ NYR +T+ + G VLLS
Sbjct: 228 AIDLAKHLLQVHA----ETYALVVSTENITLNAYMGNYRPMLVTNTLFRMGGAAVLLS 281
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 47 GYAAIQPDTYKLVSLNENLDIDRTH-DNYRAITSLKAK 157
GY A+ DT S N + D D H DN+ A++ LK K
Sbjct: 773 GYQAVYDDTEASPSSNNSED-DAVHQDNFEALSKLKVK 809
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,470,919
Number of Sequences: 37544
Number of extensions: 452557
Number of successful extensions: 1270
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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