Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00168
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              47   2e-05
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              37   0.015
SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)              36   0.046
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.19 
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)                    32   0.57 
SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)        31   1.00 
SB_20937| Best HMM Match : hATC (HMM E-Value=0.04)                     31   1.00 
SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)                 29   5.3  
SB_46347| Best HMM Match : AAA_5 (HMM E-Value=2.2e-10)                 28   7.0  
SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)                28   7.0  

>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 829

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 26/85 (30%), Positives = 46/85 (54%)
 Frame = +2

Query: 5   DLDPALSFCTHLLYGYAAIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLS 184
           D+DP L  CTH+L+ +A +   T+KL    EN      H+ Y+ I +LK   P L   ++
Sbjct: 44  DIDPFL--CTHILFSFAKVNQTTHKLDIYEEN-----DHELYQRINALKKINPKLKTQIA 96

Query: 185 VGGDADTEEPEKYNLLLESQQARML 259
           VGG    E+   ++ ++ +++ R +
Sbjct: 97  VGGWTHEEKNSPFSKMVATKEKRAI 121



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = +1

Query: 259 FINSGVLLAEQYGFDGIDLAWQFPRVK---PKKIRSTWGSLWHGIKKTF 396
           FI S +     +GFDG+DL W++P ++   PK  +  +  L   +++ F
Sbjct: 122 FIKSAIETLRTHGFDGLDLDWEYPGMRGGSPKSDKGRFTLLCRELREAF 170



 Score = 31.5 bits (68), Expect = 0.76
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 259 FINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWG 366
           FI S +      GFDG+DL W++P ++    +S  G
Sbjct: 507 FIKSAIETLRTNGFDGLDLDWEYPGMRGGSPKSDKG 542


>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 569

 Score = 37.1 bits (82), Expect = 0.015
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 241 AASPYAFINSGVLLAEQYGFDGIDLAWQFP 330
           AAS   FI+S + +  Q+ FDG DL W++P
Sbjct: 225 AASRKVFIDSSIAMLRQWNFDGFDLDWEYP 254



 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = +2

Query: 20  LSFCTHLLYGYAAIQPDTYKLVSLNENLDIDRTHDN--YRAITSLKAKYPGLTVLLSVGG 193
           +   T LL G+A+    +  +      L +   +D+  Y+    LK K PGL  LL+VGG
Sbjct: 149 MQLLTLLLLGFASFAAASNYVHRCRHTLAMFEWNDDKLYKEFNDLKLKNPGLKTLLAVGG 208



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = +3

Query: 540 HDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGA 719
           ++V  I  ++D +N+ AYD         E  +   +  P           A  YW+  GA
Sbjct: 308 YEVDKIGQILDLINLMAYDLRGMWE--PETGHHTALEGPPGEE--LTVSFAAQYWIDKGA 363

Query: 720 PSQKIVLSI 746
           P+ KI L +
Sbjct: 364 PASKIALGL 372


>SB_55143| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
          Length = 270

 Score = 35.5 bits (78), Expect = 0.046
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +1

Query: 241 AASPYAFINSGVLLAEQYGFDGIDLAWQFPRVK 339
           AA+   FI+S + +   +GFDG+DL W++P  +
Sbjct: 113 AATRKVFIDSVIRILRTWGFDGLDLDWEYPATR 145



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 11  DPALSFCTHLLYGYAAI-QPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSV 187
           D     CTHL+Y +A I Q +   +   N+    D+ +  + A   LK K P L  LL+V
Sbjct: 42  DIPADLCTHLMYSFAKINQKNELAMYEWND----DKLYPRFNA---LKQKNPELKTLLAV 94

Query: 188 GG 193
           GG
Sbjct: 95  GG 96


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = +1

Query: 259 FINSGVLLAEQYGFDGIDLAWQFP 330
           FI+S + L+++Y FDG DL W++P
Sbjct: 500 FISSLLQLSDKYDFDGFDLDWEYP 523



 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/70 (27%), Positives = 34/70 (48%)
 Frame = +3

Query: 540 HDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGA 719
           ++V  +  ++D++N+  YD + P        +TA +  P ++        AV YW+  G 
Sbjct: 577 YEVHKLAGILDWINLMTYDLHGPWEPYT-GHHTALVGPPGDK---LTVSYAVKYWMEKGM 632

Query: 720 PSQKIVLSIA 749
           P  KI L +A
Sbjct: 633 PCGKIALGMA 642


>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +2

Query: 5   DLDPALSFCTHLLYGYAAIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLS 184
           ++DP+L  CTH++Y +A +  D  KL     N   D     Y+ +  LK+    +  LL+
Sbjct: 44  NIDPSL--CTHIVYAFAKMNADNSKLAMFEWN---DAA--MYKKVNDLKSS-SNMKTLLA 95

Query: 185 VGG 193
           VGG
Sbjct: 96  VGG 98



 Score = 31.1 bits (67), Expect = 1.00
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 FINSGVLLAEQYGFDGIDLAWQFP 330
           FI+  +L    + FDG+DL W++P
Sbjct: 119 FIDDAILFLRNHMFDGLDLDWEYP 142



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 18/69 (26%), Positives = 32/69 (46%)
 Frame = +3

Query: 540 HDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGA 719
           +++ A+   +D++N+ +YD +    +     + A        +PL     AV  W+  G 
Sbjct: 195 YEISALGQALDWINLMSYDLHGDWEDTT-GHHAA--MDSSTGDPL-TVTHAVDLWIAGGM 250

Query: 720 PSQKIVLSI 746
           PS KI L I
Sbjct: 251 PSNKIALGI 259


>SB_8439| Best HMM Match : rve (HMM E-Value=1.5e-18)
          Length = 317

 Score = 31.9 bits (69), Expect = 0.57
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = -2

Query: 366 SPGRADLLRLNSWELPGEVNSIETILFSQQHSGINESIRACCDSSRRLYFSGSSVSASPP 187
           SP +  + R    +LP  VN  + +L     +G+ E ++AC D   + YF+  +   +P 
Sbjct: 165 SPAQLLMSRTTRSKLP--VN--KELLVPSVPTGVREELKACQDKQAKYYFNRGAKPLAPL 220

Query: 186 TDNNTVR 166
           T N  VR
Sbjct: 221 TPNEGVR 227


>SB_24154| Best HMM Match : Glyco_hydro_18 (HMM E-Value=2.2e-32)
          Length = 561

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 259 FINSGVLLAEQYGFDGIDLAWQFP 330
           FI+  +L    + FDG+DL W++P
Sbjct: 43  FIDDAILFLRNHMFDGLDLDWEYP 66


>SB_20937| Best HMM Match : hATC (HMM E-Value=0.04)
          Length = 606

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +1

Query: 331 RVKPKKIRSTWGSLWHGIKKTFGTTPVDEKESEHREGFTALVRE-LKQALIHKPKMQLGV 507
           RV P+   + W SLW   K  F           H E F    R+ L  AL+H P +QL V
Sbjct: 323 RVMPRYNSTRWWSLWECAKVVFEEWGHVPAFLAHDEEFAKASRQKLSDALLHNP-VQLRV 381

Query: 508 MFCPTLILQ 534
            F   + L+
Sbjct: 382 EFAALMELE 390


>SB_53162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 962

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = +2

Query: 182 SVGGDADTEEPEKYNLLLESQQARMLSLIPECCWLNNMVSMELTSP 319
           + G +++  +PEKY  ++ S    M+   P+  W+ + +S +L+ P
Sbjct: 789 NAGENSEEADPEKYREIVGSLIYAMVCTRPDISWIISKLSRKLSCP 834


>SB_25506| Best HMM Match : 7tm_1 (HMM E-Value=3.2e-05)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = -2

Query: 471 LFQFTNKGSETFTVLRFLLID---WRGAECLLNSMPKRSPGRADLLRLNSWELPGEVNSI 301
           LF F  + S   +++  L+I    +R   C+++   KRS     +L L SW LPG +NS 
Sbjct: 111 LFAFMVETSTWVSLVTLLVISVERFRAVSCVIHLTEKRSV--LIILLLVSWVLPGLLNSG 168

Query: 300 ETILFSQQH-SGINESIR 250
               +  ++  G +E +R
Sbjct: 169 GFAFYGAKNIGGTSECVR 186


>SB_46347| Best HMM Match : AAA_5 (HMM E-Value=2.2e-10)
          Length = 275

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
 Frame = -2

Query: 348 LLRLNSWELPGEVNSIETILFSQQHSGINESIRACCDSSRRLYFSGSSVSASPP-TDNNT 172
           L +  +W    E N IE  + S     I    RA  D   +  F G+ +S  P  T   T
Sbjct: 59  LAQSGAWACFDEFNRIELEVLSVVAQQILTIQRAVMDQVAKFVFEGTEISLDPTCTMFIT 118

Query: 171 VRPGY 157
           + PGY
Sbjct: 119 MNPGY 123


>SB_28600| Best HMM Match : EGF_CA (HMM E-Value=4.2e-40)
          Length = 1042

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +2

Query: 122 DNYRAITSLKAKYPGLT---VLLSVGGDADTEEPEKYNL 229
           DNY +   +   YP  T   V+LS  GDA T   +KY L
Sbjct: 112 DNYASCKLIPLTYPYYTPPVVILSANGDASTLPSDKYAL 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,663,109
Number of Sequences: 59808
Number of extensions: 523826
Number of successful extensions: 1577
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1577
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)