Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00168
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein si... 48 9e-06
At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein si... 46 4e-05
At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein si... 45 6e-05
At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein si... 42 6e-04
At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein si... 39 0.003
At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein si... 38 0.005
At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein si... 38 0.005
At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein si... 33 0.15
At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein si... 32 0.35
At3g09080.1 68416.m01067 transducin family protein / WD-40 repea... 31 1.1
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 29 3.3
At3g49670.1 68416.m05429 leucine-rich repeat transmembrane prote... 28 5.8
At3g24110.1 68416.m03027 calcium-binding EF hand family protein ... 28 5.8
At2g40095.1 68415.m04928 expressed protein 28 5.8
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con... 28 7.6
>At4g19820.1 68417.m02906 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 366
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/70 (34%), Positives = 41/70 (58%)
Frame = +3
Query: 531 TIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLT 710
++ H V A+ + +D+VN+ AYD+Y + +++ AP+Y P P + DA V W
Sbjct: 186 SVLHPVNAVADSLDWVNLVAYDFY-ESGSSRVTCSPAPLYDPITTGP--SGDAGVRAWTQ 242
Query: 711 SGAPSQKIVL 740
+G P++K VL
Sbjct: 243 AGLPAKKAVL 252
Score = 34.3 bits (75), Expect = 0.088
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Frame = +1
Query: 232 AGIAASPYA---FINSGVLLAEQYGFDGIDLAWQFPRV 336
A +A++P + FI+S + LA GF G+DL W++P +
Sbjct: 105 ASMASNPTSRKLFISSSIKLARSCGFHGLDLNWKYPSI 142
>At4g19730.1 68417.m02897 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 332
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/77 (29%), Positives = 40/77 (51%)
Frame = +3
Query: 519 NVNSTIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVT 698
+V T + V + +D+VN+ AYD+Y P ++K TA ++ N N + D+ +
Sbjct: 175 SVYKTFTYPVQVMRESLDWVNIIAYDFYGPVSSSKFTVPTAGLHVSSN-NEGPSGDSGLK 233
Query: 699 YWLTSGAPSQKIVLSIA 749
W+ G P +K VL +
Sbjct: 234 QWIKDGLPEKKAVLGFS 250
Score = 34.7 bits (76), Expect = 0.066
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 259 FINSGVLLAEQYGFDGIDLAWQFP 330
FI+S + +A GF G+DLAW++P
Sbjct: 110 FIDSWIFIARSNGFHGLDLAWEYP 133
>At4g19810.1 68417.m02905 glycosyl hydrolase family 18 protein
similar to chitinase/lysozyme GI:467689 from [Nicotiana
tabacum]
Length = 379
Score = 44.8 bits (101), Expect = 6e-05
Identities = 22/70 (31%), Positives = 40/70 (57%)
Frame = +3
Query: 531 TIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLT 710
++ + V A+ + +D+VN+ AYD+Y P ++ A ++ P N P + DA W+
Sbjct: 188 SVLYPVSAVASSLDWVNLMAYDFYGPGW-SRVTGPPAALFDPSNAGP--SGDAGTRSWIQ 244
Query: 711 SGAPSQKIVL 740
+G P++K VL
Sbjct: 245 AGLPAKKAVL 254
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = +1
Query: 232 AGIAASPYA---FINSGVLLAEQYGFDGIDLAWQFP 330
A +A++P + FI+S + +A YGF G+DL W++P
Sbjct: 107 ASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 142
>At4g19770.1 68417.m02901 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 261
Score = 41.5 bits (93), Expect = 6e-04
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +3
Query: 519 NVNSTIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVT 698
N N +Y V I L+D+VN+ AYD+Y P A +Y Q+ P + D+ V
Sbjct: 77 NYNGVVY-PVKFISELLDWVNIKAYDFYGPGCTEVTGP-PAALYL-QSDGP--SGDSGVK 131
Query: 699 YWLTSGAPSQKIVL 740
W+ +G P++K VL
Sbjct: 132 DWIDAGLPAEKAVL 145
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Frame = +1
Query: 238 IAASPY---AFINSGVLLAEQYGFDGIDLAWQFPR 333
+A+S Y +FI S + +A YGFDG+DL W++PR
Sbjct: 1 MASSSYGRKSFILSTISIARSYGFDGLDLDWEYPR 35
>At4g19800.1 68417.m02904 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 398
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Frame = +1
Query: 232 AGIAASP---YAFINSGVLLAEQYGFDGIDLAWQFPRVKPK-----KIRSTWGSLWHGIK 387
A +A++P +FI S + +A YGF G+DL W++PR + + K+ W S
Sbjct: 86 ASMASNPDSRASFIQSTITVARSYGFHGLDLDWEYPRNEEEMYDFGKLLEEWRSAVEAES 145
Query: 388 KTFGTT 405
+ GTT
Sbjct: 146 NSSGTT 151
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/67 (32%), Positives = 37/67 (55%)
Frame = +3
Query: 540 HDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGA 719
+ V AI N +D++N+ AYD+Y P + A +Y P + ++ D+ V W +G
Sbjct: 170 YPVLAISNSLDWINLMAYDFYGPGWSTVTGP-PASLYLPTDG---RSGDSGVRDWTEAGL 225
Query: 720 PSQKIVL 740
P++K VL
Sbjct: 226 PAKKAVL 232
>At4g19750.1 68417.m02899 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 362
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/70 (30%), Positives = 39/70 (55%)
Frame = +3
Query: 540 HDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTSGA 719
+ V AI + +D+VN+ AYD+Y P + A ++ P N ++ D+ ++ WL +
Sbjct: 179 YPVQAIADNLDFVNIMAYDFYGPGWSPVTGP-PAALFDPSNPAG-RSGDSGLSKWLEAKL 236
Query: 720 PSQKIVLSIA 749
P++K VL +
Sbjct: 237 PAKKAVLGFS 246
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 256 AFINSGVLLAEQYGFDGIDLAWQFP 330
AFI+S + +A + F G+DLAW++P
Sbjct: 106 AFIDSSIDIARKKDFYGLDLAWEYP 130
>At4g19740.1 68417.m02898 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 289
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 528 STIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWL 707
+++ + V AI +D+VN+ AY++Y T E A +Y P + P D + +WL
Sbjct: 157 NSVSYPVQAINRSLDWVNLIAYEFYGLT---TEIGPPAGLYDPSIKGPC--GDTGLKHWL 211
Query: 708 TSGAPSQKIV 737
+G P +K V
Sbjct: 212 KAGLPEKKAV 221
Score = 34.7 bits (76), Expect = 0.066
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 256 AFINSGVLLAEQYGFDGIDLAWQFP 330
+FI+S + +A GF G+DLAW++P
Sbjct: 88 SFISSSISIARSLGFYGLDLAWEYP 112
>At4g19720.1 68417.m02896 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:899342 from [Nicotiana
tabacum]
Length = 363
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 232 AGIAASPYA---FINSGVLLAEQYGFDGIDLAWQFPR 333
A +A++P + FI S + A Y FDG+DL W++P+
Sbjct: 96 ASMASNPTSRKSFIWSAISSARYYRFDGLDLVWKYPK 132
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 522 VNSTIYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQN-RNPLQNADAAVT 698
V ++ + + I +D+VN+ AYD+Y+ ++ A ++ P N + P D +
Sbjct: 174 VYDSVSYPIREIKKKLDWVNLIAYDFYS---SSTTIGPPAALFDPSNPKGPC--GDYGLK 228
Query: 699 YWLTSGAPSQKIVL 740
W+ +G P++K VL
Sbjct: 229 EWIKAGLPAKKAVL 242
>At4g19760.1 68417.m02900 glycosyl hydrolase family 18 protein
similar to chitinase, class V GI:505267 from [Nicotiana
tabacum]
Length = 365
Score = 32.3 bits (70), Expect = 0.35
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +1
Query: 256 AFINSGVLLAEQYGFDGIDLAWQFP 330
AFI+S + +A + F G+DLAW++P
Sbjct: 114 AFIDSSIDIARKKDFYGLDLAWEYP 138
Score = 32.3 bits (70), Expect = 0.35
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +3
Query: 534 IYHDVPAIINLVDYVNVGAYDYYTPTRNNKEADYTAPIYTPQNRNPLQNADAAVTYWLTS 713
+ + V AI + +D+VN+ AYD+Y P + A + P N ++ ++ + WL
Sbjct: 185 VEYPVKAIADNLDFVNIMAYDFYGPGWSPVTGPPAALFHDPSNPAG-RSGNSGLRKWLDE 243
Query: 714 G-APSQKIVL 740
P +K VL
Sbjct: 244 AKLPPKKAVL 253
>At3g09080.1 68416.m01067 transducin family protein / WD-40 repeat
family protein contains 8 WD-40 repeats; similar to
JNK-binding protein JNKBP1 (GP:6069583) [Mus musculus]
Length = 1026
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Frame = -3
Query: 464 NSRTRAVKPSRCSDSFSSTGV--VPNVFLIPCQSDPQVERIFLGLTLGNCQARSIPSKPY 291
NS + +R + S S + V +++ + ++ PQ IF ++LGN Q +S PS+ Y
Sbjct: 113 NSFVSVISANRVNSSGSDEQIDEVISIYALT-EAGPQTSVIF-HVSLGNIQIQSFPSRAY 170
Query: 290 CSANST 273
S+N +
Sbjct: 171 FSSNKS 176
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 310 DLAWQFPRVKPKKIRS-TWGSLWHGIKKTFGTTPVDEKESE 429
+L ++ R+ K+ S WG W +KK+F T DE+ E
Sbjct: 546 ELQQEYERLSSKQKSSHNWGLRWQKVKKSFQTKREDEETRE 586
>At3g49670.1 68416.m05429 leucine-rich repeat transmembrane protein
kinase, putative CLAVATA1 receptor kinase, Arabidopsis
thaliana, EMBL:ATU96879
Length = 1002
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 731 LLAWSTAREPVCD--SGVGVLQWVAILWGVNRSCVISFFVVACRSV 600
LL T ++PV + GV ++QWV + N+ CV+ + SV
Sbjct: 883 LLELITGKKPVGEFGDGVDIVQWVRSMTDSNKDCVLKVIDLRLSSV 928
>At3g24110.1 68416.m03027 calcium-binding EF hand family protein
contains Pfam profile: PF00036 EF hand, similar to
calcium-modulated proteins
Length = 229
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 627 LLCCCVSECNNRKRQRLHSQLS 562
+LCCCV+ NN+K L ++L+
Sbjct: 1 MLCCCVNSENNKKYAELDAKLA 22
>At2g40095.1 68415.m04928 expressed protein
Length = 209
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 325 FPRVKPKKIRSTWGSLWHGIKKTF 396
F + + K R W SLW GIK F
Sbjct: 3 FSKEEISKTRKLWSSLWRGIKTIF 26
>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:3820531) [Pinus
contorta]; similar to beta-glucosidase GI:804655 from
(Hordeum vulgare)
Length = 520
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Frame = +2
Query: 47 GYAAIQPDTYKLVSLNENLDIDRTHDN----YRAITSLKAKYPGLTVLLSVGGDADTEEP 214
GYA ++ D V++ E D++ H + ++ + LK +YP + + ++ G D ++P
Sbjct: 368 GYA-LKLDRKGNVTIGELTDVNWQHIDPTGFHKMLNYLKDRYPNMPMFITENGFGDLQKP 426
Query: 215 E 217
E
Sbjct: 427 E 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,866,725
Number of Sequences: 28952
Number of extensions: 349908
Number of successful extensions: 1071
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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