Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    27   2.4  
SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   4.1  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    26   5.5  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.2  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.5  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   9.5  

>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 663 QSKVKCYININMFYLEKINFRILLYLKSPKSLNGTTICDTN 541
           + K KC+I  N  Y+   N R+L YL      +G T CD N
Sbjct: 103 RKKYKCWIFTNA-YIVHAN-RVLKYLGIEDCFDGITYCDYN 141


>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 459 CGSLITLKVRNSRRLSFVCIQNVLGYSNL--CR 551
           C   +T  +R+ + ++F+CIQN+L    L  CR
Sbjct: 5   CLKYLTNGLRSKQMINFLCIQNILSARTLKICR 37


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 277 PLFPH*NKCGSSSDELLYFKAFNFYFCSCPY 369
           PLF H N C +  D   Y    N    SCP+
Sbjct: 233 PLFNHANGCDTLCDLFFYTPYLNTIQTSCPW 263


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 464 LINYLESSKFKKTVICLYPECSRLF 538
           L+ +L S   +K  IC  PEC R F
Sbjct: 93  LVAHLRSHTGEKPFICSVPECDRSF 117


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 172 VLYFENLPNSTGNYKKMTTLLKKVKDEVTGYKIHDPLFPH*NKCGSS 312
           + Y EN   +  NY +M   L + +D +   ++ D + P    C  S
Sbjct: 90  ITYLENSEFTKENYAQMINSLYRYQDAILKSELKDSILPKLVNCACS 136


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +1

Query: 85   TDYGTPVLNIASPYRKLPSGTKFAKDICDVLYFENLPNSTGNYKKMTTLLKKVKDEVTGY 264
            TD    +LNI   YR       F     +   +     S   + +  TLL+KV D++   
Sbjct: 1929 TDLSQQLLNIVIKYRN------FDNIFRETSLYTLTTTSFKTHSQAFTLLQKVVDQLDQL 1982

Query: 265  KIHDPL 282
            KIH+ L
Sbjct: 1983 KIHETL 1988


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 269 FMIHYFRIEINVGHQVTN 322
           F +H+FR+ ++ GH + N
Sbjct: 646 FSVHWFRVVLDEGHNIRN 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,188,642
Number of Sequences: 5004
Number of extensions: 64720
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)