Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    30   1.9  
07_03_0190 + 14893243-14893582,14893684-14893808                       29   5.7  
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191...    28   7.6  

>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 414 NKYVV*LDKGFYKHLCGSLITLKVRNSRRLSFVCIQNVL 530
           NK ++ LD G    + G  +TL  +N  ++S +C++N L
Sbjct: 533 NKTLISLDIGNVPRISGRAVTLIAKNCEQISSLCLRNCL 571


>07_03_0190 + 14893243-14893582,14893684-14893808
          Length = 154

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -2

Query: 160 LWRIWSRSVACGKETRC 110
           LWR W RS+A GKET C
Sbjct: 117 LWR-WGRSLAVGKETGC 132


>01_07_0270 -
           42417782-42417850,42418207-42418342,42418826-42419108,
           42419459-42419507,42419614-42419616
          Length = 179

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 601 NIVVLKEPKIFERNYYLRHKLE*PRTFWIQTNDSLLEFRTFKVINEPHKCL*NPL 437
           N+ V+K  + F+   Y+R        +W  TND +   R++  +N P + + N L
Sbjct: 39  NLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSY--LNLPSEVVPNTL 91


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,836,525
Number of Sequences: 37544
Number of extensions: 354821
Number of successful extensions: 686
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)