Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)                     29   4.4  
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)                    29   5.8  

>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 859

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +1

Query: 49  TPDAQQTGRVKTTDYGTPVLNIASPYRKLPSGTKFAKDICDVLYFENLPNSTGNYKKMTT 228
           T D+     ++  +  + V  I    R++P       DI      ENLP+ +GNY+++T+
Sbjct: 78  TNDSTYEVNMEEIETSSLVSKIDEVSREIPDLQSKVSDITQAST-ENLPSESGNYERVTS 136

Query: 229 ---LLKKVKDEV 255
              LLK  ++EV
Sbjct: 137 VTDLLKPAQEEV 148


>SB_27401| Best HMM Match : SCP (HMM E-Value=9e-23)
          Length = 1105

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 7   TPTTTAGSD-TDVLKTPDAQQTGRVKTTDYGTPVLNIASPYRKLPSGTKFAKD 162
           TPTTT  S+ T  L TP+   T  +++T   TP    A+     P+    A D
Sbjct: 471 TPTTTEASNLTTELMTPEVTTTPTIESTTQTTPTTGPATGNTTTPTIQPIAAD 523


>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
          Length = 955

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 109 NIASPYRKLPSGTKFAKDICDVLYFENLPNSTGNYKKMTTLLKKVKD 249
           +I S + ++P+   FAK    VL F+N P     Y K    L   KD
Sbjct: 163 SIGSAFVRIPADHTFAKKNALVLMFKNAPAMNQTYFKCVAKLSVPKD 209


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,012,452
Number of Sequences: 59808
Number of extensions: 454129
Number of successful extensions: 1112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)