Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical pr...    31   0.73 
AC027664-1|AAK18923.1|  326|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical pr...    28   9.0  

>U80445-5|AAB37796.1|  185|Caenorhabditis elegans Hypothetical
           protein C50F2.4 protein.
          Length = 185

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 499 DCHLFVSRMFSVILICVADSSSVQ 570
           DC  F+  +FSVIL+ VAD + VQ
Sbjct: 4   DCSSFIFSLFSVILVVVADENDVQ 27


>AC027664-1|AAK18923.1|  326|Caenorhabditis elegans Hypothetical
           protein EGAP798.1 protein.
          Length = 326

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +1

Query: 295 NKCGSSSDELLYFKAFNFYFCSCPYGVLQGQRRMSFI 405
           N+C      LL     +    +CP+G+L+G++R+ F+
Sbjct: 130 NRCPLCGSHLLGLPLADHRLENCPFGILEGEQRLEFL 166


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 295 NKCGSSSDELLYFKAFNFYFCSCPYGVLQGQRRMSFI 405
           N+C      LL     +  +  CP   L+G+RR+ F+
Sbjct: 131 NRCSVCGSHLLGMPLADHSYIRCPLDALEGERRLEFL 167


>Z78546-1|CAB01769.1|  364|Caenorhabditis elegans Hypothetical
           protein T21H8.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = -1

Query: 290 CGNSGS*ILYPVTSSLTFLSRVVIFL*FPVEFGRFSKYKTSQMSLANLVPLGSLR*GDAM 111
           C ++G    +PV +   F+  +  FL FP+ F  F KY       +NL+ L +L     +
Sbjct: 4   CESNGLLYHHPVYTFAIFIQGLSSFLAFPMMFFVFKKYGHKVYYHSNLLFLVALNAASCL 63

Query: 110 LRTGV 96
           +  G+
Sbjct: 64  ILAGL 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,498,041
Number of Sequences: 27780
Number of extensions: 356946
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)