Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   3.3  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   3.3  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   7.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 780 GECCILSIYKGNKINNTRANM 718
           G CC++ I+  +K   T +NM
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNM 94


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 780 GECCILSIYKGNKINNTRANM 718
           G CC++ I+  +K   T +NM
Sbjct: 74  GNCCVIWIFSTSKSLRTPSNM 94


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 61  QQTGRVKTTDYGTPVLNIASPYRKLPSG 144
           Q++G+ K  D  TPV++  S     P G
Sbjct: 55  QESGQPKQVDNETPVVSQGSDSYTAPDG 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,671
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)