Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00167
         (803 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative simila...    33   0.29 
At2g45890.1 68415.m05707 expressed protein contains Pfam profile...    29   3.6  

>At5g27680.1 68418.m03319 DEAD/DEAH box helicase, putative similar
           to WRN (Werner syndrome) protein - Mus musculus,
           EMBL:AF241636; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain, PF00627: UBA/TS-N domain
          Length = 858

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +1

Query: 7   TPTTTAGSDTDVLKTPDAQQTGRVKTTDYGTPVLNIASPYRKLPSGTKFAKDICDVL-YF 183
           T T T     D+L++    +  ++  T +  P L  +  + +    + +AKD  +++  +
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSYAKDFQNLVDLY 391

Query: 184 ENLPNSTGNYKKMTTLLKKVKDEVTGYKIHD 276
               NSTG   K   ++ +  +E T +  HD
Sbjct: 392 SEKKNSTG---KKLAVISRESEEQTDFGSHD 419


>At2g45890.1 68415.m05707 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 463

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 94  GTPVLNIASPYRKLPSGTKFAKDICDVLYFENLPNST 204
           GTP  +++SPYR+  S         DV  F N P++T
Sbjct: 12  GTPTSSVSSPYRRTYSDISGLSHRFDVQSFYNRPSNT 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,056,743
Number of Sequences: 28952
Number of extensions: 315492
Number of successful extensions: 631
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1824072800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)