Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00166
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.62 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   7.6  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 289 VPY-RPSRPDGGASHDRGEHGARSIISCETGLAHTGAIVYYQRGNF 155
           VPY R  RPD    ++     + ++I+    ++HTG +V+   G F
Sbjct: 82  VPYNRVWRPDTILYNNADPQYSSAVINTNVIVSHTGEVVWLSHGIF 127


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 424  LRVAPEEHPVLLTEAPLNPKANREKM 501
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 566 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 697
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +2

Query: 653 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 751
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = -1

Query: 295 PSVPYRPSRPDGGASHDRGEHGARSIISCETGLA 194
           P+      +P+   + D GEH   ++   E GLA
Sbjct: 109 PTKSILEKKPELVDATDPGEHNGDTVTDVEAGLA 142


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 246,543
Number of Sequences: 438
Number of extensions: 5868
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)