Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00165
         (705 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    22   5.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 371 TGPPNPSKCSSPPTL 415
           TG P PS  +SPPT+
Sbjct: 222 TGIPTPSTSASPPTV 236


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = +3

Query: 420 SVFDTTKKVLVEFYAPWCGHCKQLVPIY 503
           +V D    +  +F+A W G   +  P+Y
Sbjct: 192 NVLDIINVMTYDFHAMWAGFTAENSPLY 219


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = +3

Query: 420 SVFDTTKKVLVEFYAPWCGHCKQLVPIY 503
           +V D    +  +F+  W G   Q  P+Y
Sbjct: 191 NVLDVINVMTYDFHGSWAGVTAQNSPLY 218


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,144
Number of Sequences: 336
Number of extensions: 2905
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)