Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00164
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    23   2.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   5.0  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   5.0  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   5.0  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    22   5.0  
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    21   8.8  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    21   8.8  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 215 RRNLTTVSRKHLRAGRGGEHCIGKRI*LL 301
           ++NLT  +  +L  G G  +CIG+R  LL
Sbjct: 419 KKNLTPYT--YLPFGEGPRNCIGQRFALL 445


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 LQKPNCLIPSYQRFQHYS 304
           L  P   +P+YQ+ QH S
Sbjct: 6   LMNPGTALPTYQQPQHIS 23


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 LQKPNCLIPSYQRFQHYS 304
           L  P   +P+YQ+ QH S
Sbjct: 6   LMNPGTALPTYQQPQHIS 23


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 LQKPNCLIPSYQRFQHYS 304
           L  P   +P+YQ+ QH S
Sbjct: 6   LMNPGTALPTYQQPQHIS 23


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 357 LQKPNCLIPSYQRFQHYS 304
           L  P   +P+YQ+ QH S
Sbjct: 6   LMNPGTALPTYQQPQHIS 23


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 442 SLARLKLSDKIKDKH 486
           S  +LKL++ I DKH
Sbjct: 73  SFHKLKLTNNISDKH 87


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 442 SLARLKLSDKIKDKH 486
           S  +LKL++ I DKH
Sbjct: 73  SFHKLKLTNNISDKH 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,555
Number of Sequences: 336
Number of extensions: 2653
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)