Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00164
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    33   0.036
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    33   0.036
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    28   1.0  
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe...    28   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   1.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   4.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   5.4  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   9.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   9.5  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   9.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.5  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   9.5  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 512 KEARNELLKKHPDMDFSAISKRLGEMWSN 598
           KE    LLK +P ++ S +SK +GEMW N
Sbjct: 115 KEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 33.1 bits (72), Expect = 0.036
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 512 KEARNELLKKHPDMDFSAISKRLGEMWSN 598
           KE    LLK +P ++ S +SK +GEMW N
Sbjct: 115 KEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 154 DDIETRFRRQTPVKTYTTSRQEEPDYSIQETPQSRSRR*TLH-REANLIIMRIMLKTLIA 330
           D+IE   +R +  KT  +  Q +         + +S   TL+ R ANL  +++++K +  
Sbjct: 729 DEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQLLVKDISN 788

Query: 331 WNQTVRLLKRDRPVLRL 381
             + +R + R+  VLR+
Sbjct: 789 LEEEIRTIDRETEVLRI 805


>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 652

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 387 LYMMEKNSKKKLIVKDGRVIGTAKAQRQDK 476
           LY+M KN K+K   KD +   + K Q+++K
Sbjct: 24  LYLMNKNKKRKPEKKDDKEKSSKKVQKKNK 53


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 545  PDMDFSAIS-KRLGEMWSNVNYNERY 619
            PDM+ S +  KRL + W+ +  NE+Y
Sbjct: 1412 PDMEKSKVEHKRLAQEWAGLEVNEKY 1437


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 136  MDFESPDDIETRFRRQTPVKTYTTSRQEEPDYSIQETPQSRS 261
            +D+ S  D E     ++P+ T    +Q  PD++I ETP  RS
Sbjct: 1274 IDYGSQVDTENFMLERSPLATPKPLKQ--PDFNIYETPIVRS 1313


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -1

Query: 207 CGVCLDGCLAP 175
           C VCLD CLAP
Sbjct: 606 CSVCLDPCLAP 616


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/42 (23%), Positives = 24/42 (57%)
 Frame = +2

Query: 488 NYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNE 613
           N SL++   E  ++L K+H  +      +++ ++W ++ Y+E
Sbjct: 297 NISLWETELEKLHQLKKEHLPIFLEDCRQQILQLWDSLFYSE 338


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 203  VYVLTGVWRLNLVXXXXXXXXXXSLELFFLTRPLLDIPVTSKS 75
            VYV+ GVW ++ V           L  F+  +P   IP  SKS
Sbjct: 1109 VYVVAGVWPVSFVLLSVCILLYKGLPPFYRQKP-GSIPAFSKS 1150


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 163 RYRRATQSPLAWNSSF*PDHSSIYR*LLNLPASLY 59
           +YR AT +P  +     P H S+YR L N  ++ Y
Sbjct: 32  QYRSATDNPSLYQV---PTHGSLYRNLSNSASAYY 63


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 146 SRPTISRLGSGARHPSRHTPQVVRRNLTTVSRKHLRAGRG 265
           S  +I  LGS +R     TP +  R++ +V+ +     +G
Sbjct: 208 SNASIHSLGSSSRPTLTRTPSITSRSVNSVTERSKSLSKG 247


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 333 PSYQRFQHYSHNNQIRFPMQCSPPRPALRCFLDTVVRFL 217
           P+   F H   NNQI      S   P  R F D  + FL
Sbjct: 218 PATDDFSHNKPNNQISISTFYSSLDPYFRAFNDDDIAFL 256


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,758
Number of Sequences: 5004
Number of extensions: 44046
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)