Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00164
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217           33   0.15 
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449...    32   0.46 
12_01_0046 - 373974-374188,374298-374580,374698-374764,375705-37...    29   4.2  
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490...    28   5.6  
04_03_0531 + 16817676-16818299                                         28   7.4  
05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    27   9.8  
04_01_0596 - 7852529-7855185,7855545-7855581                           27   9.8  
02_05_0261 + 27243898-27243938,27244068-27244157,27244293-272443...    27   9.8  

>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
          Length = 504

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = +2

Query: 512 KEARNELLKKHPDMDFSAISKRLGEMWSNVN------YNERYLWKRKA 637
           K+  NE+ K+ PD DF  +S  LG  W  +       Y ERY  +++A
Sbjct: 169 KDQWNEIKKESPDADFKEVSNALGAKWKALGAEEKQPYEERYRQEKEA 216


>01_01_0605 +
           4497308-4497472,4497719-4497904,4498898-4499003,
           4499062-4499216,4499341-4499424,4499498-4499589,
           4499729-4499837,4499944-4500030,4500153-4500245,
           4501144-4501341,4501481-4501632,4501724-4501874,
           4501975-4502073,4502159-4502326,4502624-4502702,
           4502870-4503000
          Length = 684

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +2

Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNER 616
           R  T +  + +A+  R  +   +PD+  + I+K+LGEMW  +   E+
Sbjct: 601 RAMTPFMYFSMAE--RGNMKNNNPDLPTTEIAKKLGEMWQKMTGEEK 645


>12_01_0046 -
           373974-374188,374298-374580,374698-374764,375705-375889
          Length = 249

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = +2

Query: 539 KHPDMDFSAISKRL-------GEMWSNVNYNERYLWKRKAKRF 646
           KHPD +F A+   +       G++W ++N+  R    +K KRF
Sbjct: 82  KHPDEEFDAVKPLMESSVRFRGQVWFHINFWARSRKSKKIKRF 124


>05_01_0562 +
           4907937-4907990,4908890-4909075,4909180-4909285,
           4909377-4909513,4909989-4910072,4910157-4910248,
           4910358-4910466,4910554-4910640,4910737-4910829,
           4911384-4911581,4911659-4911810,4911910-4912060,
           4912174-4912272,4912362-4912535,4912680-4912758,
           4912858-4912979
          Length = 640

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNER 616
           +K  R  L   +P++  + I+K+LGE W  +   E+
Sbjct: 569 SKAERANLKNSNPELATTEIAKKLGERWQKMTAEEK 604


>04_03_0531 + 16817676-16818299
          Length = 207

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 351 KPNCLIPSYQRFQHYSHNNQIR-FPMQCSPPRPALRCFLDT 232
           +P+C   S +  Q +S    +R   + C PP PA +C++ T
Sbjct: 167 QPSCAF-SARHLQQWSSTAAVRGTSIYCRPPAPATQCYIAT 206


>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 485 TNYSLYDVAKEARNELLKKHPD 550
           TN++L+DV +E +N LL +H +
Sbjct: 918 TNFALHDVDEEEKNNLLVEHSE 939


>04_01_0596 - 7852529-7855185,7855545-7855581
          Length = 897

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +2

Query: 485 TNYSLYDVAKEARNELLKKHPD 550
           TN++L+DV +E +N LL +H +
Sbjct: 810 TNFALHDVDEEEKNNLLVEHSE 831


>02_05_0261 +
           27243898-27243938,27244068-27244157,27244293-27244350,
           27244441-27244485,27244778-27244855,27244940-27245041,
           27245150-27245173
          Length = 145

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 515 EARNELLKKHPD-MDFSAISKRLGEMWSNVNYNERYLWKRKA 637
           E R E    HPD    +A+SK  GE W  ++  E+  +  KA
Sbjct: 46  EFRQEYQAAHPDNKSVAAVSKAAGEKWRAMSEQEKAPYVDKA 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,486,058
Number of Sequences: 37544
Number of extensions: 294539
Number of successful extensions: 696
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)