Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00164
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)               36   0.029
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.029
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.050
SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.15 
SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)                     33   0.15 
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)               33   0.27 
SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)               32   0.35 
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.35 
SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)               31   0.81 
SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)               31   1.1  
SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)             31   1.1  
SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)                 31   1.1  
SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)               29   2.5  
SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)               28   5.7  
SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)                28   5.7  
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)                28   5.7  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_46509| Best HMM Match : HMG_box (HMM E-Value=4.2e-10)
          Length = 145

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 467 TR*RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
           T+ R  + Y L+  + E R  + K+HP+  F  IS+ +GE W N +   +  ++ KA+
Sbjct: 34  TKKRGQSGYLLF--SHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQ 89


>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1361

 Score = 35.9 bits (79), Expect = 0.029
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +2

Query: 467  TR*RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
            T+ R  + Y L+  + E R  + K+HP+  F  IS+ +GE W N +   +  ++ KA+
Sbjct: 1267 TKKRGQSGYLLF--SHEMRGIIRKEHPEYAFGEISRLIGEEWRNASAARKAEYENKAQ 1322


>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 35.1 bits (77), Expect = 0.050
 Identities = 14/41 (34%), Positives = 28/41 (68%)
 Frame = +2

Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           R ++ ++HPDM  + ISKRLG+ W  ++ +E+  +  +++R
Sbjct: 60  RRKMAEEHPDMHNAEISKRLGKRWKLLSESEKRPFVEESER 100


>SB_21901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +2

Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           R+++ K +P+    A+SK LGEMWS +  +++  ++  AK+
Sbjct: 117 RDDVKKDNPNASGGALSKVLGEMWSKMTDDDKTQYQDMAKK 157


>SB_12646| Best HMM Match : SSrecog (HMM E-Value=0)
          Length = 783

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 515 EARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKA 637
           + R E+  K+P +  + +SK  GEMW N+   ++  W+ KA
Sbjct: 555 DTRQEIKDKNPGISVTEVSKVAGEMWKNL--TDKSKWEEKA 593


>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 557

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           ++E R ++ +++P M  S ISKRLG  W  +  +++  +  +AK+
Sbjct: 338 SREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKK 382


>SB_33348| Best HMM Match : HMG_box (HMM E-Value=3.2e-34)
          Length = 179

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           ++E R ++ +++P M  S ISKRLG  W  +  +++  +  +AK+
Sbjct: 21  SREERRKIAQENPKMHNSEISKRLGSEWKQLADDDKKPFVEEAKK 65


>SB_13764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           ++E R ++ + +P M  S ISKRLG  W  ++  E+  +  +A+R
Sbjct: 800 SRERRRKMAQDNPKMHNSEISKRLGSEWKLLSEQEKRPYIDEARR 844


>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/43 (27%), Positives = 27/43 (62%)
 Frame = +2

Query: 515 EARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           E R ++  ++PD+ F  +++ LG MWS +   ++ L+  +A++
Sbjct: 190 EHREKVRSENPDLPFHEVTRILGNMWSQLPTPQKQLFLEEAEK 232


>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1024

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 12/43 (27%), Positives = 26/43 (60%)
 Frame = +2

Query: 515 EARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           E R ++  +HP++ F  ++K LG  WS ++ +++  +   A+R
Sbjct: 157 EQREKVRSEHPELPFPEVTKILGAEWSKMSQDDKQRYLDDAER 199


>SB_24989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/45 (33%), Positives = 28/45 (62%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           +++ R  + ++ P M  S ISKRLG  W+++  +E+  +  +AKR
Sbjct: 19  SRKERRRIAEECPRMLNSEISKRLGLEWNSLTLDEKQPYVEEAKR 63


>SB_27742| Best HMM Match : HMG_box (HMM E-Value=1.3e-24)
          Length = 201

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           ++  R +L  K+P+M    ISK LG  WS ++  E+  +  +AKR
Sbjct: 20  SRTERRKLALKYPNMLNCEISKLLGAEWSRLSEEEKRPFVTEAKR 64


>SB_41131| Best HMM Match : HMG_box (HMM E-Value=4.1e-28)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           AKE R  + +++P M  + ISK LG+ W  +  +E+  +  +A R
Sbjct: 21  AKEKRRAMNRENPKMRNAEISKILGDEWRKMPESEKLPYTEEALR 65


>SB_25320| Best HMM Match : 7tm_1 (HMM E-Value=3.29305e-43)
          Length = 391

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 152 PTISRLGSGARHPSRHTPQVVRRNLTTVSRKHLRAGRGGEH 274
           PT++ + S  R  SR TP+ +RR +T+     +R   G  H
Sbjct: 344 PTMTAISSELRETSRGTPRQLRRKMTSPELSVMRPQTGDSH 384


>SB_99| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 965

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 137 WTLSRPTISRLGSGARHPSRHTPQVVRRNLTTV 235
           WTL+   ++ L  GAR  + H    +R N T+V
Sbjct: 39  WTLTESDVTHLSGGARRNNTHAMSSIRYNFTSV 71


>SB_52386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           A+  R+ + K++P  + + IS RLGE+W++++  ++  +  +A R
Sbjct: 112 ARLHRSTIAKRYPQANNAEISIRLGEIWNDLSSEQQKPYFDEATR 156


>SB_26162| Best HMM Match : HMG_box (HMM E-Value=1.5e-31)
          Length = 367

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
           AK  R +  +++P +  + ISK LG+ W+ +   ++  +  KA+R
Sbjct: 105 AKVMRRKFAEENPKLHNAEISKLLGKAWNELTTKDKRPFVEKAER 149


>SB_37758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 485 TNYSLYDVAKEARNELLK-KHPDMDFSAISKRLGEMWSNVNYNER 616
           T Y  Y     +R E +K +HP + F  I+K LG+ W+++   E+
Sbjct: 199 TGYVHYVRFLNSRRESVKHQHPHLTFPEITKMLGQEWNSLLPEEK 243


>SB_18968| Best HMM Match : HMG_box (HMM E-Value=1.2e-19)
          Length = 1204

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 512  KEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRK 634
            KE +  +  ++P   F  I+K +G+MW N+   ++ ++  K
Sbjct: 937  KETQAAIRLQNPSAQFGEIAKIVGQMWENLPEEQKKVYHCK 977


>SB_8014| Best HMM Match : HMG_box (HMM E-Value=0.00031)
          Length = 406

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 512 KEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
           +E R+++ +++PD+    + K   + W  ++  E+ +W  KAK
Sbjct: 341 EENRDQIEEENPDIPDEDVVKIAMKTWKGLDSVEKKVWNEKAK 383


>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
          Length = 533

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/50 (24%), Positives = 27/50 (54%)
 Frame = -1

Query: 330 SYQRFQHYSHNNQIRFPMQCSPPRPALRCFLDTVVRFLLTTCGVCLDGCL 181
           SY++F H   + + RF +Q S    A+  ++   +  + ++  +C+ GC+
Sbjct: 117 SYKKFAHSVSHCEFRFDLQISTDLVAILNYVHHGMPSMASSSTMCITGCI 166


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNER 616
           +K  R  + +KHP  D   +SK LGE W  +   E+
Sbjct: 527 SKRHRALVHQKHPHQDNRTVSKILGEWWYALGPEEK 562


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,921,852
Number of Sequences: 59808
Number of extensions: 333785
Number of successful extensions: 851
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)