Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00164
(651 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 37 0.014
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 37 0.014
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 37 0.014
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 37 0.014
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 37 0.014
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 32 0.41
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 32 0.41
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 31 0.71
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 30 1.6
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 30 1.6
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 30 1.6
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 30 1.6
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA 649
A++ R ++LK +PDM S ISK LG W ++ +E+ + + R +
Sbjct: 189 ARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 235
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA 649
A++ R ++LK +PDM S ISK LG W ++ +E+ + + R +
Sbjct: 186 ARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 232
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA 649
A++ R ++LK +PDM S ISK LG W ++ +E+ + + R +
Sbjct: 292 ARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 338
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA 649
A++ R ++LK +PDM S ISK LG W ++ +E+ + + R +
Sbjct: 340 ARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 386
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKRFA 649
A++ R ++LK +PDM S ISK LG W ++ +E+ + + R +
Sbjct: 340 ARDERRKILKAYPDMHNSNISKILGSRWKGMSNSEKQPYYEEQSRLS 386
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
+++ R E+ HPD +++ LG+MW V + ++++KA+
Sbjct: 145 SQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 188
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
+++ R E+ HPD +++ LG+MW V + ++++KA+
Sbjct: 144 SQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 187
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
+++ R E+ HPD +++ LG+MW V + ++++KA+
Sbjct: 146 SQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 189
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 31.9 bits (69), Expect = 0.41
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +2
Query: 509 AKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
+++ R E+ HPD +++ LG+MW V + ++++KA+
Sbjct: 146 SQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETKDMYEQKAQ 189
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
R ++ + +P M S ISKRLG W ++ E+ + +AKR
Sbjct: 63 RRKMAQDNPKMHNSEISKRLGAEWKQLSEQEKRPFIDEAKR 103
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
++ + Y L+ E R ++ ++PD F +SK +G W ++ ++ ++ +A+
Sbjct: 1451 KSKSGYILFSA--EVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 1503
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
++ + Y L+ E R ++ ++PD F +SK +G W ++ ++ ++ +A+
Sbjct: 1451 KSKSGYILFSA--EVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 1503
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/55 (21%), Positives = 30/55 (54%)
Frame = +2
Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
++ + Y L+ E R ++ ++PD F +SK +G W ++ ++ ++ +A+
Sbjct: 81 KSKSGYILFSA--EVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAE 133
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
R ++ + PDM + ISK+LG W ++ E+ + +A+R
Sbjct: 108 RRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAER 148
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAKR 643
R ++ ++P M S ISKRLG W ++ E+ + +AKR
Sbjct: 75 RKKMALENPKMHNSEISKRLGTEWKMLSEQEKRPFIDEAKR 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,075,586
Number of Sequences: 27780
Number of extensions: 248760
Number of successful extensions: 664
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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