Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00164
         (651 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro...    34   0.071
At1g04880.1 68414.m00485 high mobility group (HMG1/2) family pro...    32   0.38 
At3g28730.1 68416.m03587 structure-specific recognition protein ...    31   0.50 
At4g23800.1 68417.m03422 high mobility group (HMG1/2) family pro...    31   0.88 
At3g11890.2 68416.m01458 expressed protein                             30   1.5  
At3g11890.1 68416.m01457 expressed protein                             30   1.5  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    29   3.5  
At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin ...    28   4.7  
At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy cha...    27   8.2  

>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
           protein similar to SP|P40618 High mobility group protein
           HMG2A {Gallus gallus}; contains Pfam profile PF00505:
           HMG (high mobility group) box
          Length = 446

 Score = 34.3 bits (75), Expect = 0.071
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +2

Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRK 634
           R +T Y L+   K+  NE+ K++P+ DF   S  LG  W  ++  E+  ++ K
Sbjct: 131 RPSTPYILW--CKDNWNEVKKQNPEADFKETSNILGAKWKGISAEEKKPYEEK 181


>At1g04880.1 68414.m00485 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to SP|O15347|HMG4_HUMAN High
           mobility group protein 4 (HMG-4) (High mobility group
           protein 2a) (HMG-2a) {Homo sapiens}; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 448

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 16/51 (31%), Positives = 31/51 (60%)
 Frame = +2

Query: 485 TNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKA 637
           + Y+ +   + AR + L  HP  D   IS+ +GE+W+ +N +E+ +++ KA
Sbjct: 268 SGYNFFFAEQHARLKPL--HPGKDRD-ISRMIGELWNKLNEDEKLIYQGKA 315


>At3g28730.1 68416.m03587 structure-specific recognition protein 1 /
           high mobility group protein / HMG protein nearly
           identical to SP|Q05153 Structure-specific recognition
           protein 1 homolog (HMG protein) {Arabidopsis thaliana};
           contains Pfam profile PF00505: HMG (high mobility group)
           box; contains Pfam profile PF03531: Structure-specific
           recognition protein
          Length = 646

 Score = 31.5 bits (68), Expect = 0.50
 Identities = 11/40 (27%), Positives = 25/40 (62%)
 Frame = +2

Query: 521 RNELLKKHPDMDFSAISKRLGEMWSNVNYNERYLWKRKAK 640
           R+ + K+HP + F  + K LG+ W  ++ +++  ++ KA+
Sbjct: 577 RDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAKAQ 616


>At4g23800.1 68417.m03422 high mobility group (HMG1/2) family
           protein similar to HMG2B [Homo sapiens] GI:32335;
           contains Pfam profile PF00505: HMG (high mobility group)
           box
          Length = 456

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
 Frame = +2

Query: 476 RTNTNYSLYDVAKEARNELLKKHPDMDFSAISKRLGEMWSNVN------YNERYLWKRKA 637
           R +++Y L+   K+   E+ K++P+ DF   S  LG  W +++      Y ERY  +++A
Sbjct: 140 RPSSSYVLW--CKDQWTEVKKENPEADFKETSNILGAKWKSLSAEDKKPYEERYQVEKEA 197


>At3g11890.2 68416.m01458 expressed protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 193 KTYTTSRQEEPDYSIQETPQSRSRR*TLHR----EANLIIMRIMLKTLIAWNQTVRLLKR 360
           ++ TT +   P  S+QE+ +++ RR  +HR       +   R+M  +++  N+ +R+L  
Sbjct: 391 RSLTTRKAPAPKRSLQESRKNQDRRVEIHRRRAGHKPIRFPRVMCSSVVMDNEKLRVLNL 450

Query: 361 DRPV 372
           ++ V
Sbjct: 451 EKKV 454


>At3g11890.1 68416.m01457 expressed protein
          Length = 500

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
 Frame = +1

Query: 193 KTYTTSRQEEPDYSIQETPQSRSRR*TLHR----EANLIIMRIMLKTLIAWNQTVRLLKR 360
           ++ TT +   P  S+QE+ +++ RR  +HR       +   R+M  +++  N+ +R+L  
Sbjct: 364 RSLTTRKAPAPKRSLQESRKNQDRRVEIHRRRAGHKPIRFPRVMCSSVVMDNEKLRVLNL 423

Query: 361 DRPV 372
           ++ V
Sbjct: 424 EKKV 427


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 644 ISWLCASTSISRCNSH*TTFLQGVLI*PRNPY 549
           I +L   T    C S  T F++G L+ PRNPY
Sbjct: 74  IFYLRQVTFSGPCKSSITFFIRGTLLAPRNPY 105


>At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin
           storage protein / NWMU2-2S albumin 4 identical to
           SP|P15460
          Length = 166

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 139 DFESPDDIETRFRRQTPVKTYTTSRQEEP 225
           +F+  DDIE   RRQ   K  +  RQEEP
Sbjct: 79  EFDMEDDIENPQRRQLLQKCCSELRQEEP 107


>At1g72500.1 68414.m08383 inter-alpha-trypsin inhibitor heavy
           chain-related low similarity to Inter-alpha-inhibitor H4
           heavy chain [Rattus norvegicus] GI:2292988; contains
           Pfam profile PF00092: von Willebrand factor type A
           domain
          Length = 758

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/69 (26%), Positives = 29/69 (42%)
 Frame = -1

Query: 366 PIPLQKPNCLIPSYQRFQHYSHNNQIRFPMQCSPPRPALRCFLDTVVRFLLTTCGVCLDG 187
           P+ +  P+  +PSYQ + H   +     P+Q       + C+LDT     +T  G     
Sbjct: 54  PVAVDNPD--VPSYQPYVHARCDPSALVPLQMLGIEMNIDCWLDTA---FVTVTGRWRVH 108

Query: 186 CLAPEPSLD 160
           C+ P    D
Sbjct: 109 CVRPSKRFD 117


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,439
Number of Sequences: 28952
Number of extensions: 235023
Number of successful extensions: 614
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)