Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00163
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    26   3.1  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.2  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   9.5  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   9.5  

>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = +2

Query: 257  FRLSLRVARN-YGFNFFLF--CLQHGESQTSFRIFRSFVTNEKCIKTQLLIE 403
            F+ ++  A N Y FNFFLF  C Q     ++ + FR+ V     I T++L E
Sbjct: 1490 FQDNINYASNRYSFNFFLFSVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLTE 1541


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = +2

Query: 287 YGFNFFLF------CLQHGESQTSFRIFRSFVTNEKCIKTQLLIENNSLISTSHL 433
           Y  N FLF      C + G+S+   R  R+ + NE     Q  +   S+I  SHL
Sbjct: 290 YPKNTFLFEVMARHCCEIGQSRFGARAIRACLENENATFEQQALVVASIIINSHL 344


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 296  NFFLFCLQHGESQTSFRIFRSFV 364
            N F   +QH ES+ SF   RSFV
Sbjct: 969  NEFSEFIQHLESEVSFNSLRSFV 991


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 35  HENRGEGAFIFKSL 76
           HE R EGAFI KSL
Sbjct: 372 HERRKEGAFINKSL 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,788,745
Number of Sequences: 5004
Number of extensions: 30717
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)