Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00163
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               27   0.12 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   8.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.1  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +2

Query: 248 VLVFRLSLRVA-RNYGFNFFLFCLQHGESQTSFRIFRSFVTNEKCIKTQLLIENNSLIST 424
           + V+ LS+ V  R  G N  L  +        + I    +T +  IK Q L++    IS 
Sbjct: 7   IFVYILSVAVIIRANGINEILKIMAVSMKDIRYCIIHMGLTFKDFIKMQELLQEED-ISE 65

Query: 425 SHLEVYGKIITNNKCYILCIMYSL*NVQMNE 517
            +++ Y   +TN  C+I C +     +Q +E
Sbjct: 66  GNIKKY---LTNYSCFITCALEKSHIIQNDE 93


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 88  LQ*IKNNFIISKFGPCNLSL*LNF 159
           LQ    NF+I  +GPC L + L++
Sbjct: 209 LQRHMGNFLIQVYGPCVLLVVLSW 232


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 143 ERLQGPNFEIMKLFLIYCN 87
           + L  P F + K F  YCN
Sbjct: 202 KNLHLPRFTLEKFFTDYCN 220


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 143 ERLQGPNFEIMKLFLIYCN 87
           + L  P F + K F  YCN
Sbjct: 202 KNLHLPRFTLEKFFTDYCN 220


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 175 INNDY*NLVKVKDYKDQ 125
           INN+Y NLV+   + D+
Sbjct: 624 INNNYINLVRPNTFTDK 640


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,881
Number of Sequences: 438
Number of extensions: 2624
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)