Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00162
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   124   1e-29
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   124   1e-29
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    31   0.13 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    27   1.6  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.1  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    26   5.0  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    26   5.0  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    25   6.5  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   8.7  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  124 bits (299), Expect = 1e-29
 Identities = 57/90 (63%), Positives = 78/90 (86%)
 Frame = +1

Query: 238 EGSQDHVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 417
           +G +  V+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113

Query: 418 KIMRNRSMARYLSGSVKEILGTAQSVGCTV 507
           + MR +S+A+ LSG+VKEILGTA SVGCTV
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSVGCTV 143



 Score =  102 bits (245), Expect = 4e-23
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 80  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKI 253
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRV 58


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  124 bits (299), Expect = 1e-29
 Identities = 57/90 (63%), Positives = 78/90 (86%)
 Frame = +1

Query: 238 EGSQDHVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 417
           +G +  V+LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A
Sbjct: 54  KGLRVTVKLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVA 113

Query: 418 KIMRNRSMARYLSGSVKEILGTAQSVGCTV 507
           + MR +S+A+ LSG+VKEILGTA SVGCTV
Sbjct: 114 RTMRFKSLAKELSGTVKEILGTAFSVGCTV 143



 Score =  102 bits (245), Expect = 4e-23
 Identities = 44/58 (75%), Positives = 51/58 (87%)
 Frame = +2

Query: 80  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKI 253
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRV 58


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -2

Query: 509  PTVHPTDCAVPRISFTEPERYRAIDLFLMIFAIPI-TSSREMLPL 378
            P++ P    V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1466 PSLPPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = +1

Query: 259 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 438
           Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  RNR 
Sbjct: 27  QASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKRRNRK 86

Query: 439 MARYLSGSVKEI 474
               L  +V  I
Sbjct: 87  ARENLKVNVSSI 98


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 553 TPLLMSSIRSCGGLPPQYIQLTVLCQESLLLSQKGTGPL 437
           TP+ M    +CG +P    +L V   +   + +KGT PL
Sbjct: 440 TPIPMVHCETCGAVPVPESELPVKLPDLDKIYEKGTSPL 478


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 277 CFELSAAHDLETLPVTCGLGNVITH 203
           C ++   H ++T+ V CG+G  + H
Sbjct: 437 CHKIIKEHGIDTIFVLCGMGGRVDH 461


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = +3

Query: 153 HHLWPLKSVLLVCLLKRWVMTLPRPQVTGRVSRSCAADSSKQTS 284
           H  W    V+ V    + + T P   VTGRV R CA    K  S
Sbjct: 288 HKGWGQSIVIGVAAAGQEISTRPFQLVTGRVWRGCAFGGVKGRS 331


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -1

Query: 360 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHMI 250
           +FT+ R  LK   +   CR N +  GLS   C  + +
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANSV 841


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 159 DDVAPTSPPTHRKFTILI 106
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,573,143
Number of Sequences: 5004
Number of extensions: 53490
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)