Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00162
(609 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1026 + 30214437-30214937 136 1e-32
02_05_0416 + 28791512-28792012 132 2e-31
05_05_0381 + 24531622-24532918,24535334-24535468,24535592-245357... 29 3.8
03_06_0776 - 36176390-36177589 29 3.8
11_06_0754 - 26935647-26937780,26940890-26941827 28 5.0
11_01_0669 - 5454116-5454153,5454569-5454770,5454865-5455029,545... 28 6.7
07_03_0574 - 19629875-19631032 27 8.8
07_03_0313 + 16620817-16621515 27 8.8
04_04_1551 - 34348110-34348225,34348468-34348606,34348658-343488... 27 8.8
02_05_0104 - 25858414-25858509,25858711-25858782,25859081-258591... 27 8.8
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 27 8.8
>04_04_1026 + 30214437-30214937
Length = 166
Score = 136 bits (329), Expect = 1e-32
Identities = 66/90 (73%), Positives = 81/90 (90%)
Frame = +1
Query: 238 EGSQDHVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 417
+G + V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIA 114
Query: 418 KIMRNRSMARYLSGSVKEILGTAQSVGCTV 507
+IMRNRSMA+ ++G+VKEILGT SVGCTV
Sbjct: 115 RIMRNRSMAKEMAGTVKEILGTCVSVGCTV 144
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKI 253
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRV 59
>02_05_0416 + 28791512-28792012
Length = 166
Score = 132 bits (320), Expect = 2e-31
Identities = 64/90 (71%), Positives = 80/90 (88%)
Frame = +1
Query: 238 EGSQDHVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 417
+G + V+LTVQNRQA+++VVPSAAAL+I+ALKEP RDRKK KNIKH+GNISL+DVI IA
Sbjct: 55 KGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHSGNISLDDVIEIA 114
Query: 418 KIMRNRSMARYLSGSVKEILGTAQSVGCTV 507
++MR RSMA+ ++G+VKEILGT SVGCTV
Sbjct: 115 RVMRPRSMAKEMAGTVKEILGTCVSVGCTV 144
Score = 90.6 bits (215), Expect = 8e-19
Identities = 41/59 (69%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Frame = +2
Query: 80 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATS-DWKGLKI 253
MPPK DP ++ V +R GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T+ DWKGL++
Sbjct: 1 MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRV 59
>05_05_0381 +
24531622-24532918,24535334-24535468,24535592-24535764,
24536029-24536239,24536287-24536554,24536664-24536814,
24536938-24537246
Length = 847
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 165 PLKSVLLVCLLKRWVMTLPRPQVTGRVSRSCAADSSKQTSPD 290
PL S +L+ L +LP P+ G V+R A + + + PD
Sbjct: 791 PLMSQVLLMLASADATSLPDPRKPGFVARRAATEDTSSSRPD 832
>03_06_0776 - 36176390-36177589
Length = 399
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +1
Query: 361 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 450
+K+I++ G++ LE + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142
>11_06_0754 - 26935647-26937780,26940890-26941827
Length = 1023
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -3
Query: 607 FFFFFLYRY*KHLFINGQTPLLMSSIRSCGGLPPQYIQLTVLCQESLLLSQKG 449
+ FF + ++ G T + IR CG LP + +T + ++S + Q G
Sbjct: 377 YLFFNTVSGSRFIYSPGSTEVSDDIIRKCGSLPLAIVSITSILEKSRKMEQWG 429
>11_01_0669 -
5454116-5454153,5454569-5454770,5454865-5455029,
5455278-5456183
Length = 436
Score = 27.9 bits (59), Expect = 6.7
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 77 KMPPK-FDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKV 205
K+P + F N +KIV ++C G EV +G G+ +K+
Sbjct: 369 KIPEEPFVSNHLKIVEIKCKGKEVMWVCKFLKTLGTFGIPLEKI 412
>07_03_0574 - 19629875-19631032
Length = 385
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -2
Query: 413 IPITSSREMLPLCLIFFCFLRSRG-GSLRALMIRAAAEGTTAIW 285
+P E++P C ++F F R+ G SL A + AA +W
Sbjct: 247 LPFAGKAELVPGCNLWFGFSRADGSSSLCAADLAAAPHRACGVW 290
>07_03_0313 + 16620817-16621515
Length = 232
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -1
Query: 243 PFQSLVALAMSSPTFLGDRPRGPILGAKDDVAPTSPPTHRKFTILI 106
PF +A++ D +LGAK D+ S P H K +L+
Sbjct: 15 PFGQRCRIALAEKKLPYDYSEQELLGAKSDLLLRSNPIHAKVPVLL 60
>04_04_1551 -
34348110-34348225,34348468-34348606,34348658-34348896,
34349042-34349140,34349207-34350188,34350737-34350832,
34350936-34351064,34351253-34351332,34351420-34351661,
34351743-34352692
Length = 1023
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 119 NLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIA 220
N +C G E G S AP++ PLG+ PK G+ IA
Sbjct: 736 NSKCAGAE-GINS--APRVTPLGIRPKG-GESIA 765
>02_05_0104 -
25858414-25858509,25858711-25858782,25859081-25859156,
25859286-25859334,25859826-25860012,25860164-25860340,
25860519-25860632
Length = 256
Score = 27.5 bits (58), Expect = 8.8
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 1/119 (0%)
Frame = +3
Query: 150 PHHLWPLKSVLLVCLLKRWVMTLPRPQVTGRVSRSCAADSSKQTSPDXXXXXXXXPYHQS 329
PH L + LL + +TGR S SCA+++ P P Q
Sbjct: 93 PHGLLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMP------PAKPVQQE 146
Query: 330 P*GASS*S*KAEKYQTQRQHLP*GCNRNCEDHEKQINGPVPFWLSKRDSWHSTV-SWMY 503
P + A + +RQ +P NR +D ++I P +S R+++ + +W +
Sbjct: 147 PELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPD-ISHREAFSAAAKNWAH 204
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -1
Query: 360 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHMILRPFQSLVALAMSSPTFL 196
L T+TR + +G++ G NSY + LH+ P ++L+A A ++ ++
Sbjct: 453 LSTLTRVVRRGAESTGIEANGNSY---DLSTKLLHLAWHPSENLIACAAANSLYM 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,573,237
Number of Sequences: 37544
Number of extensions: 388515
Number of successful extensions: 1097
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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