Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00162
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)             142   3e-34
SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)                       28   6.8  
SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)                     27   9.0  
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              27   9.0  

>SB_19611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score =  142 bits (343), Expect = 3e-34
 Identities = 69/108 (63%), Positives = 89/108 (82%), Gaps = 1/108 (0%)
 Frame = +1

Query: 238 EGSQDHVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIA 417
           +G +  V LT+QNRQA+++VVPSA++LII+ALKEPPRDRKK KNIKHNGNI+L+DV  +A
Sbjct: 54  KGLKITVCLTIQNRQAKVSVVPSASSLIIKALKEPPRDRKKVKNIKHNGNITLDDVTNVA 113

Query: 418 KIMRNRSMARYLSGSVKEILGTAQSVGCTV-GAGRHMILLMTSTAEFD 558
           K+MR RSMAR+LSG+VKEILGT QSVGCTV G   H ++   ++ E +
Sbjct: 114 KVMRPRSMARHLSGTVKEILGTCQSVGCTVDGMAPHDVIDKINSGEIE 161



 Score =  115 bits (276), Expect = 3e-26
 Identities = 52/58 (89%), Positives = 54/58 (93%)
 Frame = +2

Query: 80  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKI 253
           MPPKFDPNEI+ V LRC GGEVGAT+SLAPKIGPLGLSPKKVGDDIAKAT DWKGLKI
Sbjct: 1   MPPKFDPNEIQYVYLRCTGGEVGATASLAPKIGPLGLSPKKVGDDIAKATQDWKGLKI 58


>SB_48085| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/82 (18%), Positives = 34/82 (41%)
 Frame = +1

Query: 271 QNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRSMARY 450
           Q    ++  V   A +++ +    P+ +   KN+ H   +   D     +  R+   + +
Sbjct: 74  QKMDTRVIAVLFVAIMVLSSTNALPKQKGSYKNMNHADFLKGLDRASSKRDCRDSHWSCF 133

Query: 451 LSGSVKEILGTAQSVGCTVGAG 516
              + ++I  TAQ+  C +  G
Sbjct: 134 FQSNYEDICSTAQAEECALSCG 155


>SB_48343| Best HMM Match : CBF (HMM E-Value=1.3)
          Length = 669

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
 Frame = +1

Query: 364 KNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQ--SVGCTVGAGRHMILLM 537
           + I+ +   SL+ ++GIA+++RN  MA Y+    + +LGT+    VG      R+ ++ M
Sbjct: 39  EKIERHKKTSLQGLMGIAQMIRN--MAGYVDDLWEILLGTSTPLPVGVLTTEERNALVKM 96

Query: 538 T 540
           T
Sbjct: 97  T 97


>SB_28159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 491

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 176 GPLGLSPKKVGDDIAKATSDWKG 244
           GPLG+  +++ D    ++SDW G
Sbjct: 337 GPLGMEDRRIQDSQINSSSDWDG 359


>SB_44505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 490

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = -1

Query: 243 PFQSLVALAMSS--PTFLGDRPRGPILGAKDDVAPTSP 136
           PF +L+    SS    F+ DRPRGP  G  D +    P
Sbjct: 360 PFNALIVGPTSSGKTRFIVDRPRGPFRGKFDYIVLVCP 397


>SB_3212| Best HMM Match : APC10 (HMM E-Value=0.36)
          Length = 646

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 98  PNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVG 208
           P+     +L+C G E   TSS+ P +G LG   K  G
Sbjct: 597 PSMTNTTSLKCQGDEKSGTSSITP-LGSLGTYDKSHG 632


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 277 RQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKH 378
           RQ +   +PSA    IR  +E PR  +K  N+KH
Sbjct: 107 RQVEPLPLPSALKEWIREYEEEPRFDRKLTNLKH 140


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,609,361
Number of Sequences: 59808
Number of extensions: 418357
Number of successful extensions: 996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)