Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00162
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical pr...   126   1e-29
Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical p...    50   1e-06
AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine re...    28   4.5  
U13070-4|AAC46640.2|  531|Caenorhabditis elegans Aldehyde dehydr...    28   6.0  
AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin...    28   6.0  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   7.9  

>Z82274-1|CAB05226.1|  165|Caenorhabditis elegans Hypothetical
           protein JC8.3a protein.
          Length = 165

 Score =  126 bits (304), Expect = 1e-29
 Identities = 61/101 (60%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
 Frame = +1

Query: 259 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 438
           +LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ +I IA+IMR RS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 439 MARYLSGSVKEILGTAQSVGCTV-GAGRHMILLMTSTAEFD 558
           MA+ L G+VKEILGTAQSVGCT+ G   H I+   +  E +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 161



 Score =  118 bits (284), Expect = 3e-27
 Identities = 51/60 (85%), Positives = 56/60 (93%)
 Frame = +2

Query: 80  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKIMC 259
           MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+ C
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60


>Z82274-14|CAJ76933.1|   50|Caenorhabditis elegans Hypothetical
           protein JC8.3c protein.
          Length = 50

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = +1

Query: 424 MRNRSMARYLSGSVKEILGTAQSVGCTV-GAGRHMILLMTSTAEFD 558
           MR RSMA+ L G+VKEILGTAQSVGCT+ G   H I+   +  E +
Sbjct: 1   MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIE 46


>AF022976-4|AAC69083.2|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein37 protein.
          Length = 345

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 500 HPTDCAVPRISFTEPERYRAIDL 432
           HPT CAV    F +P +Y  IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313


>U13070-4|AAC46640.2|  531|Caenorhabditis elegans Aldehyde
           dehydrogenase protein 9 protein.
          Length = 531

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 569 IHQWSNSAVDVI-NKIMWRPAPTVHPTDCAVPRI 471
           ++ W+N+   V  N ++W+PAP+   T  AV ++
Sbjct: 190 VYGWNNALALVTGNSVVWKPAPSTPLTAIAVTKL 223


>AC024785-5|AAF60596.1|  577|Caenorhabditis elegans C-type lectin
           protein 73 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 253 DLETLPVTCGLGNVITHLFRRQTKRTDFR 167
           D ++LP+ C LG V+ + ++     TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 502 YIQLTVLCQESLLLSQKGTGPLICFS*SSQFR 407
           YI +  +C ++LLL    T   ICF  SSQ+R
Sbjct: 309 YINVDAIC-DTLLLWNASTNCFICFLMSSQYR 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,390
Number of Sequences: 27780
Number of extensions: 313213
Number of successful extensions: 867
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)