Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00160X
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    26   3.4  
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    25   6.0  

>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/55 (23%), Positives = 25/55 (45%)
 Frame = -3

Query: 254 DNIFYLYNAVFSNCNTIISCYICFLVILNEMCRNKHYIYIYISVAVPAIPNTNSI 90
           D+I + Y  +F+ CN   +C I       +    +    +Y+S A P +P   ++
Sbjct: 427 DSIGFKYGYIFAACNLCAACIIFLFAHETKGLTLEEINELYLSGAKPWMPRPENL 481


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = -3

Query: 284 LQSCLSQITCDNIFYLYNAVFSNCNTIISCYICFLVILNEMCRNKHYIYIYISVAVPAIP 105
           L S  +    ++I + Y  +F+ CN   +C I       +    +    +YIS A P +P
Sbjct: 417 LISFFTPFITNSIGFKYGYIFAACNLCAACIIFLFAHETKGLTLEEINELYISGAKPWMP 476

Query: 104 NTNSI 90
              ++
Sbjct: 477 RPKNL 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,280
Number of Sequences: 5004
Number of extensions: 37111
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)