Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00159
         (496 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    23   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.4  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   3.1  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.1  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   3.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             22   4.1  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   7.2  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   7.2  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQTPQT 371
           +DEAE    S+  G    + QS I +VAR+ +T  T
Sbjct: 272 SDEAEPSSTSKKSGIVRSHQQSCINRVARETKTAGT 307


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 309 RHQYCQSWILQVARQRQTPQTTCHSKS 389
           RH   ++W+    R + TPQ+   S++
Sbjct: 241 RHLERKAWVASFGRPKMTPQSLLPSQT 267


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 275 SLVCSETMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC*FCD 132
           S+V S+    +YL  KL+RN        +        Q  +C C  CD
Sbjct: 287 SVVVSDYSDYSYLDEKLERNDLDL--EKYEGISSTPSQASSCSCLDCD 332


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +1

Query: 250 DIVSEQTRLKYASAPDGKVPVI 315
           D V EQT      A D KVP+I
Sbjct: 228 DGVKEQTLQSIEMAKDAKVPII 249


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +3

Query: 264 TDEAEVCICSRWQGPRHQYCQSWILQVARQRQ 359
           ++++E  + SR Q  R +  + W++Q  R+R+
Sbjct: 20  SEDSETGLRSRTQEERLRRRREWMIQQERERE 51


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 290 ADAYFSLVCSETMSKAYLSSKLDRNS 213
           +D+ +S  CS + S+    S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 290 ADAYFSLVCSETMSKAYLSSKLDRNS 213
           +D+ +S  CS + S+    S + RNS
Sbjct: 13  SDSGYSNTCSNSQSQRSSGSSISRNS 38


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -3

Query: 263 SETMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC 144
           +E +  AY++  LD+  C+  +      +  ++++   PC
Sbjct: 39  TERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPC 78


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/40 (20%), Positives = 20/40 (50%)
 Frame = -3

Query: 263 SETMSKAYLSSKLDRNSCSF*SGNFSYQVCQSIQDGTCPC 144
           +E +  AY++  LD+  C+  +      +  ++++   PC
Sbjct: 39  TERLLNAYVNCLLDQGPCTPDAAELKRNLPDALENECSPC 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,703
Number of Sequences: 438
Number of extensions: 2649
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)