Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00158
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 144 9e-36
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 130 2e-31
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 85 8e-18
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 75 1e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 69 7e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 67 2e-12
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 67 3e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 66 5e-12
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 65 1e-11
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 64 2e-11
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 62 1e-10
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 61 2e-10
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 59 6e-10
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 57 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 57 2e-09
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 56 6e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 4e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 50 4e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 48 1e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 48 1e-06
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 44 3e-05
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 42 1e-04
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 38 0.001
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 33 0.059
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 32 0.10
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 28 1.3
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 27 2.9
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual 27 3.9
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 3.9
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 5.1
SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces p... 26 6.7
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 25 8.9
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.9
SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces p... 25 8.9
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 8.9
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 25 8.9
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 144 bits (350), Expect = 9e-36
Identities = 66/85 (77%), Positives = 79/85 (92%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE+PSAIQQRAIMP + RDV+AQAQSGTGK ATFSIS+LQ+IDTS+++CQALI+APTR
Sbjct: 38 GFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTR 97
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELAQQIQKVV+ALGD +N +CHAC+
Sbjct: 98 ELAQQIQKVVVALGDLMNVECHACI 122
Score = 118 bits (285), Expect = 7e-28
Identities = 57/89 (64%), Positives = 74/89 (83%)
Frame = +2
Query: 479 SLEC*MPCLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADE 658
++EC C+ GGT VR+D+ L++GVHVVVGTPGRV+DMI RRAL + +++FVLDEADE
Sbjct: 115 NVEC-HACI-GGTLVRDDMAALQAGVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEADE 172
Query: 659 MLSRGFKDQIHDVFKMLSADVQVILLSAT 745
MLSRGFKDQI+D+F++L QV+LLSAT
Sbjct: 173 MLSRGFKDQIYDIFQLLPPTAQVVLLSAT 201
Score = 49.6 bits (113), Expect = 5e-07
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = +1
Query: 157 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYA 252
++ ++T++D+V++TFDDMNLK ELLRGIYA
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYA 36
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 130 bits (315), Expect = 2e-31
Identities = 60/85 (70%), Positives = 72/85 (84%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
G+E PSA+Q RAI+ +GRDVIAQAQSGTGK ATFSI ILQ ID S+R+ QALI++PTR
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTR 99
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELA QIQ VV+ALGDH+N +CHAC+
Sbjct: 100 ELAVQIQNVVLALGDHMNVQCHACI 124
Score = 98.3 bits (234), Expect = 1e-21
Identities = 43/79 (54%), Positives = 61/79 (77%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT+V DI++L+ G HVV GTPGRV DMI RR L +K+ +LDEADE+L++GFK+QI
Sbjct: 125 GGTSVGNDIKKLDYGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADELLNQGFKEQI 184
Query: 689 HDVFKMLSADVQVILLSAT 745
+D+++ L QV+++SAT
Sbjct: 185 YDIYRYLPPGTQVVVVSAT 203
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = +1
Query: 157 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYA 252
M+ L T D V +F++MNLKE+LLRGIYA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYA 38
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 85.4 bits (202), Expect = 8e-18
Identities = 40/91 (43%), Positives = 59/91 (64%)
Frame = +3
Query: 222 QRRIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIR 401
+R ++ GFE+PS IQ+ +I + GRD++A+A++GTGK A F I L+++DT
Sbjct: 52 KRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKS 111
Query: 402 ECQALIMAPTRELAQQIQKVVIALGDHLNAK 494
+ Q LI+ PTRELA Q +V LG H+N K
Sbjct: 112 KIQTLILVPTRELALQTSQVCKTLGKHMNVK 142
Score = 64.9 bits (151), Expect = 1e-11
Identities = 33/79 (41%), Positives = 46/79 (58%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT +R+DI +L VH+VVGTPGRV D+ + + FV+DEAD++LS F I
Sbjct: 148 GGTTLRDDIIRLNDTVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEADKLLSPEFTPII 207
Query: 689 HDVFKMLSADVQVILLSAT 745
+ + Q+ L SAT
Sbjct: 208 EQLLSYFPKNRQISLYSAT 226
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 82 MSEDWPEDSKNGPSKDQGSYDGPPGMDPGTLDTDWDQVVET----FDDMNLKEELLRGIY 249
M+E + +N D+ S+ G P + + V +T F+D LK ELL GI+
Sbjct: 1 MAESLIQKLENANLNDRESFKGQMKAQPVDMRPKTEDVTKTRGTEFEDYYLKRELLMGIF 60
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPT 431
F+KPS IQ++A+ + R++I Q+QSGTGK A F++++L ++D S+ + QA+ +AP+
Sbjct: 134 FQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPS 193
Query: 432 RELAQQIQKVVIALGDHLNAK 494
RELA+QI VV +G + K
Sbjct: 194 RELARQIMDVVTEMGKYTEVK 214
Score = 62.1 bits (144), Expect = 8e-11
Identities = 31/63 (49%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Frame = +2
Query: 560 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGFKDQIHDVFKMLSADVQVILL 736
+V+GTPG V D++ RR L A IK+FVLDEAD ML +G DQ + +L + Q++L
Sbjct: 233 IVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLF 292
Query: 737 SAT 745
SAT
Sbjct: 293 SAT 295
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/19 (52%), Positives = 17/19 (89%)
Frame = +1
Query: 196 VETFDDMNLKEELLRGIYA 252
V++F+++ LK ELL+GIY+
Sbjct: 113 VKSFEELELKPELLKGIYS 131
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 68.9 bits (161), Expect = 7e-13
Identities = 33/82 (40%), Positives = 53/82 (64%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAP 428
+LGF+ P+ IQQ AI + RDVI AQ+G+GK A F++ ++Q++ + A+++AP
Sbjct: 63 KLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAP 122
Query: 429 TRELAQQIQKVVIALGDHLNAK 494
TRELA QI + A+G + +
Sbjct: 123 TRELAYQISEQFEAIGGSIGVR 144
Score = 44.4 bits (100), Expect = 2e-05
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQ 685
GG ++ L HV+V TPGR+ D + + +K ++DEAD +L F
Sbjct: 150 GGMDMVTQAVALSKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLLDMDFGPI 209
Query: 686 IHDVFKMLSADVQVILLSAT 745
I + K++ + + +L SAT
Sbjct: 210 IDKILKIIPHERRTLLFSAT 229
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 67.3 bits (157), Expect = 2e-12
Identities = 36/88 (40%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Frame = +2
Query: 497 PC-LHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG 673
PC ++GG ++R IRQ++ G ++ TPGR+ D+I R + IK VLDEAD ML G
Sbjct: 286 PCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVLDEADRMLDMG 345
Query: 674 FKDQIHDVFK---MLSADV-QVILLSAT 745
F+ QI + + M S + Q ++ SAT
Sbjct: 346 FEPQIRHIVEGADMTSVEERQTLMFSAT 373
Score = 38.3 bits (85), Expect = 0.001
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Frame = +3
Query: 240 RHIRL-GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISIL------------- 377
++I+L G+ +P+ +Q+ +I GRD++A AQ+G+GK A F IL
Sbjct: 182 QNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKGPAAVPV 241
Query: 378 -QQIDTSIRECQA----LIMAPTRELAQQIQK 458
Q R +A LI+APTREL QI +
Sbjct: 242 DQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 66.9 bits (156), Expect = 3e-12
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG IR L GV + + TPGR+ DM+ + + VLDEAD ML GF+
Sbjct: 228 CVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFE 287
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + D Q ++ SAT
Sbjct: 288 PQIRKIVDQIRPDRQTVMFSAT 309
Score = 49.6 bits (113), Expect = 5e-07
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ-----A 413
+LGFE P+ IQQ+A + GRD++ + +G+GK ++ + + I+
Sbjct: 139 QLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIV 198
Query: 414 LIMAPTRELAQQIQKVVIALG 476
L++APTRELA QIQ+ G
Sbjct: 199 LVLAPTRELAVQIQQECTKFG 219
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 66.1 bits (154), Expect = 5e-12
Identities = 33/75 (44%), Positives = 51/75 (68%), Gaps = 6/75 (8%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQ------QIDTSIRECQALI 419
FEKP+++Q I ++G+D++AQA++G+GK A + I IL+ QID + R AL+
Sbjct: 34 FEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALL 93
Query: 420 MAPTRELAQQIQKVV 464
+ PTRELAQQ+ V+
Sbjct: 94 LVPTRELAQQVYNVL 108
Score = 42.3 bits (95), Expect = 7e-05
Identities = 21/62 (33%), Positives = 33/62 (53%)
Frame = +2
Query: 560 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVILLS 739
+V+ TP R + L + +K V+DEAD MLS G+ + + + + L Q L+S
Sbjct: 143 IVIATPSRCVVHVASGVLPLDKLKFLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMS 202
Query: 740 AT 745
AT
Sbjct: 203 AT 204
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 64.9 bits (151), Expect = 1e-11
Identities = 34/67 (50%), Positives = 42/67 (62%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE PS +QQ I I G DV+ QA+SG GK A F +S LQQI+ E L++ TR
Sbjct: 70 GFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTR 129
Query: 435 ELAQQIQ 455
ELA QI+
Sbjct: 130 ELAFQIK 136
Score = 60.1 bits (139), Expect = 3e-10
Identities = 30/84 (35%), Positives = 50/84 (59%), Gaps = 4/84 (4%)
Frame = +2
Query: 506 HGGTNVREDIRQLES---GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRG 673
+GG N+++D+ + H+VV TPGR+ ++ + L N++K FVLDE D++L S
Sbjct: 155 YGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVD 214
Query: 674 FKDQIHDVFKMLSADVQVILLSAT 745
+ I +VF+ QV++ SAT
Sbjct: 215 MRRDIQEVFRATPPQKQVMMFSAT 238
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 64.5 bits (150), Expect = 2e-11
Identities = 36/92 (39%), Positives = 55/92 (59%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPT 431
L +P+ IQ+ I ++GR+ I A++G+GK A F++ I+++ ALI+ PT
Sbjct: 25 LAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDPSGIFALILTPT 84
Query: 432 RELAQQIQKVVIALGDHLNAKCHACMVAPMSV 527
RELA QI + ALG +LN K HA +V M +
Sbjct: 85 RELAIQIDEQFAALGANLNLK-HALIVGGMDM 115
Score = 52.4 bits (120), Expect = 7e-08
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA----NTIKLFVLDEADEMLSRGF 676
GG ++ L HVVV TPGR+ D+I IK V+DEAD +LS F
Sbjct: 111 GGMDMIRQSIDLSKRPHVVVATPGRLADLIRSNGEETIAGLRRIKFLVMDEADRLLSPTF 170
Query: 677 KDQIHDVFKML--SADVQVILLSAT 745
D + D F +L S D Q +L +AT
Sbjct: 171 ADDLDDCFSVLPASEDRQTLLFTAT 195
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 61.7 bits (143), Expect = 1e-10
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITR---RALHANTIKLFVLDEADEMLSR 670
C +GG +++ I L+ G +VV TPGR+ D+++ R + + VLDEAD M
Sbjct: 524 CAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDL 583
Query: 671 GFKDQIHDVFKMLSADVQVILLSAT 745
GF+ Q+ + + D Q +L SAT
Sbjct: 584 GFEPQVMRIINNIRPDRQTVLFSAT 608
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/72 (43%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---AL 416
LG+EKP++IQ +AI GRDVI A++G+GK F + + + I ++ + A+
Sbjct: 436 LGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAI 495
Query: 417 IMAPTRELAQQI 452
IM PTRELA QI
Sbjct: 496 IMTPTRELAVQI 507
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.9 bits (141), Expect = 2e-10
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSI--RECQALIMAP 428
GF+ P+ IQ++ I ++GRDV+ A++G+GK A F I +++ + +++ +ALI++P
Sbjct: 88 GFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEHLKSTLANSNTRALILSP 147
Query: 429 TRELAQQIQKVV 464
RELA Q KVV
Sbjct: 148 NRELALQTVKVV 159
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/79 (32%), Positives = 38/79 (48%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG ++ E L +VV TPGR + L ++I+ V DEAD + GF Q+
Sbjct: 175 GGVSLEEQFSLLSGKPDIVVATPGRFLHLKVEMKLELSSIEYVVFDEADRLFEMGFAAQL 234
Query: 689 HDVFKMLSADVQVILLSAT 745
++ L Q +L SAT
Sbjct: 235 TEILHALPTSRQTLLFSAT 253
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 59.3 bits (137), Expect = 6e-10
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Frame = +3
Query: 225 RRIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI---DTS 395
R I++ LGFE P+ IQ + I + G+D++ A +G+GK A F + IL+++
Sbjct: 268 RPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKK 327
Query: 396 IRECQALIMAPTRELAQQIQKVVIALGDHLNAKCHACMVAPMSVKI 533
+ + LI+ PTRELA Q V + + C + +S+K+
Sbjct: 328 VPTTRVLILCPTRELAMQCHSVATKIASFTDIMVCLC-IGGLSLKL 372
Score = 54.0 bits (124), Expect = 2e-08
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 494 MPCLH-GGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEADEMLS 667
M CL GG +++ ++L +V+ TPGR D M + I++ V+DEAD ML
Sbjct: 360 MVCLCIGGLSLKLQEQELRKRPDIVIATPGRFIDHMRNSQGFTVENIEIMVMDEADRMLE 419
Query: 668 RGFKDQIHDVFKMLSADVQVILLSAT 745
GF D+++++ + Q +L SAT
Sbjct: 420 DGFADELNEIIQACPKSRQTMLFSAT 445
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.2 bits (132), Expect = 2e-09
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQ 685
GG N R + +L GV+++V TPGR+ D + + ++ V+DEAD +L GF+D+
Sbjct: 197 GGANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADRILEIGFEDE 256
Query: 686 IHDVFKML-SADVQVILLSAT 745
+ + K+L S + Q +L SAT
Sbjct: 257 MRQIMKILPSENRQTLLFSAT 277
Score = 51.2 bits (117), Expect = 2e-07
Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATF---SISILQQIDTSIRE-CQALI 419
+GFE + IQ+R+I P + GRDV+ A++G+GK F +I +L + R +I
Sbjct: 107 MGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVII 166
Query: 420 MAPTRELAQQI 452
++PTRELA QI
Sbjct: 167 ISPTRELALQI 177
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 57.2 bits (132), Expect = 2e-09
Identities = 26/67 (38%), Positives = 36/67 (53%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG E Q+ G H+VV TPGR+ D + RR + V+DEAD ML GF+D +
Sbjct: 361 GGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDMGFEDDV 420
Query: 689 HDVFKML 709
+ + L
Sbjct: 421 NKILSSL 427
Score = 52.8 bits (121), Expect = 5e-08
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQID--TSIRECQ---- 410
++ +++PS+IQ+ AI +Q +D+I A++G+GK A F I ++ I + E
Sbjct: 266 KVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLG 325
Query: 411 --ALIMAPTRELAQQIQKVVIALGDHLNAKC 497
A+++APTRELAQQIQ + L +C
Sbjct: 326 PYAVVLAPTRELAQQIQVEGNKFAEPLGFRC 356
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 56.0 bits (129), Expect = 6e-09
Identities = 30/70 (42%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQALIM 422
+ GF KP IQ I G D+I +A +G+GK F I IL+ + + QAL++
Sbjct: 139 KAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVDAKYVQALVV 198
Query: 423 APTRELAQQI 452
APTRELA QI
Sbjct: 199 APTRELAHQI 208
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHAN--TIKLFVLDEADEMLSRGFKD 682
GG V++ R L HVVV TPGR++ +I L N IK VLDEAD +L + +
Sbjct: 228 GGLAVQKQQRLLNKHPHVVVATPGRLWSVINENNLTGNFKKIKCLVLDEADRLLQKSHFE 287
Query: 683 QIHDVFKMLSADV----QVILLSAT 745
++ + ++L + Q + SAT
Sbjct: 288 ELSKLLEILGNPMHTQRQTFIFSAT 312
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 50.0 bits (114), Expect = 4e-07
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMI-TRRALHANTIKLFVLDEADEMLSRGFKDQ 685
GG + + ++ GV++++GTPGR+ D + AL + ++ VLDE D ++ GF++
Sbjct: 255 GGEKKKSEKARIRKGVNILIGTPGRLADHLENTEALDVSQVRWVVLDEGDRLMDMGFEET 314
Query: 686 IHDVFKMLSADVQVI 730
+ + L + +I
Sbjct: 315 LTKILSYLESQSSII 329
Score = 42.3 bits (95), Expect = 7e-05
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQ--GRDVIAQAQSGTGKNATFSISILQQI-------DTSIR 401
++ P+AIQ + + +D +AQ+G+GK + + I+Q++ T
Sbjct: 156 KMNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTS 215
Query: 402 ECQALIMAPTRELAQQIQKVVIALGDH 482
A+IMAPTREL QQI V L ++
Sbjct: 216 GIYAVIMAPTRELCQQIYNVANKLNNN 242
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKD 682
++GG E R ++ V++GTPGR+ D+I ++ + + VLDEAD ML GF+
Sbjct: 270 VYGGAPKSEQARAAKNA-SVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQ 328
Query: 683 QIHDV 697
I ++
Sbjct: 329 DIRNI 333
Score = 42.7 bits (96), Expect = 5e-05
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQID---TSIRECQALIMAP 428
+++P+ IQ + GRDV+ A++G+GK F I LQ ++ + + L+++P
Sbjct: 185 YKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKSVPRVLVVSP 244
Query: 429 TRELAQQIQKVVIALGDHLNAK 494
TRELA Q + + +L N K
Sbjct: 245 TRELAIQTYENLNSLIQGTNLK 266
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Frame = +3
Query: 276 IQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQID----TSIRECQALIMAPTRELA 443
IQ++ I ++GRD++ A++G+GK F + +++ + TS+ AL+++PTRELA
Sbjct: 65 IQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISPTRELA 124
Query: 444 QQIQKVVIALG 476
Q + ++ +G
Sbjct: 125 IQTFETLVKIG 135
Score = 47.6 bits (108), Expect = 2e-06
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQ 685
GG N +E+ +L S ++++V TPGR+ I + + +++ +LDEAD +L GF+
Sbjct: 147 GGNNYKEEKERL-SRMNILVCTPGRLLQHIDQAVNFDTSGLQMLILDEADRILDMGFRTT 205
Query: 686 IHDVFKMLSADVQVILLSAT 745
+ + L Q +L SAT
Sbjct: 206 LDAIVSSLPVHRQTMLFSAT 225
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI---DTSIRECQALIMA 425
GF+K + +Q AI ++ +D++ +A +G+GK + + ++ DT ALI+A
Sbjct: 20 GFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDKVTRRDTDETGLGALIVA 79
Query: 426 PTRELAQQIQKV 461
PTRELA QI V
Sbjct: 80 PTRELATQIFNV 91
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/67 (31%), Positives = 38/67 (56%)
Frame = +2
Query: 545 ESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQ 724
E VV+GTPGR+ +M++ + + +++ +LDEAD ++ GF+ + + L +
Sbjct: 130 EKNPSVVIGTPGRLNEMLSH--ISSKHLEILILDEADTLIDMGFQRTLQSIISQLPKQRR 187
Query: 725 VILLSAT 745
L SAT
Sbjct: 188 TGLFSAT 194
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = +3
Query: 219 PQRRIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSI 398
P+ + E + + + IQ+ AI RD++A A +G+GK + ILQ++ +
Sbjct: 53 PEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHV 112
Query: 399 -RECQALIMAPTRELAQQIQK 458
+A+I+APTREL +QI +
Sbjct: 113 PGGYRAIIVAPTRELCEQIYR 133
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 521 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI-HDV 697
++E +L + +GTP R+ I + L ++ FV+DEAD + GF +Q H +
Sbjct: 156 IQEKAPKLREKYDMCIGTPMRLVQAI-QTGLSFEKVEFFVMDEADRLFEPGFIEQTDHIL 214
Query: 698 FKMLSADVQVILLSAT 745
S+++ L SAT
Sbjct: 215 SACTSSNICKSLFSAT 230
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 1e-04
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKNATFSISILQQI-----DTSIRECQ 410
R GFEK + +QQR + + + QA++GTGK F + + + + +
Sbjct: 55 RAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIH 114
Query: 411 ALIMAPTRELAQQI 452
++I++PTRELA QI
Sbjct: 115 SVILSPTRELALQI 128
Score = 41.5 bits (93), Expect = 1e-04
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQ 685
G + +RE+ ++++ TPGR+ D + R L + + F+LDEAD ++ GF +
Sbjct: 149 GNSKMREENAIRRGNANLLIATPGRLEDHLQNPRILESLSTDSFILDEADRLMDMGFAES 208
Query: 686 IHDVFK-MLSADVQVILLSAT 745
I ++ + + + + + SAT
Sbjct: 209 ILNIHEAVTTTKTRKLCFSAT 229
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 38.3 bits (85), Expect = 0.001
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +2
Query: 545 ESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 712
E + V+V TPGR+ D I + ++ V+DEAD +L + F+D + V +S
Sbjct: 258 ECRIDVLVSTPGRLVDHIRNDESFSLQHLRYMVIDEADRLLDQSFQDWVDTVMMEIS 314
Score = 35.9 bits (79), Expect = 0.006
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +3
Query: 309 GRDVIAQAQSGTGKNATFSISILQQID-TSIRECQALIMAPTRELAQQIQK 458
G DV A +G+GK ++ I I+Q + ++ + +++ PTREL Q+ K
Sbjct: 173 GGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLRCVVIVPTRELTVQVAK 223
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 32.7 bits (71), Expect = 0.059
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -1
Query: 530 LHGHWCHHASMAFSIQVITKSYHHLLNLL 444
L+ WCH++ FS+ +++++Y H NLL
Sbjct: 606 LYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 31.9 bits (69), Expect = 0.10
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = +3
Query: 261 EKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTREL 440
EK Q AI G VI + +GK+ + I ILQ + + A + PT+ L
Sbjct: 310 EKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL-LEDNQSTAFFVFPTKSL 368
Query: 441 AQQIQKVVI 467
AQ +K +I
Sbjct: 369 AQDQKKSLI 377
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 512 GTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEM 661
G N R + +L S + ++ + + R + A+T K+ +LDEAD M
Sbjct: 82 GPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAM 132
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 371 DSTTNRYKHS*MSSFDHGSHKRAGPTNSEGGDSS 472
D+ TNR + SSFD S P+N++G ++
Sbjct: 487 DAWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNT 520
>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 301
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 146 DLREWTLGHLTPT 184
DLREWTLG L P+
Sbjct: 110 DLREWTLGFLQPS 122
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -1
Query: 557 EHHSPVGEYLHGHWCHHASMAFSIQVITKSYHHLLNLLGQLSCGSHDQSLTFTNA 393
E+HSP+ YL G + F V T + + LS G H +S+ +NA
Sbjct: 224 ENHSPLYSYLAGGMAGSVAQMFIYPVDTLKFRIQCS---DLSRGQHGKSIILSNA 275
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 169 TLDTDWDQVVETFDDMNLKEELLRGIY 249
T D WD E FDD N + +GI+
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIF 307
>SPAC5D6.08c |mes1||meiosis II protein Mes1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 101
Score = 25.8 bits (54), Expect = 6.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 166 QGPFPEVHRNYLDPSMAHFWNPLANL 89
Q P P VH ++ PS A NPL ++
Sbjct: 75 QNPPPSVHSSHKQPSKARSPNPLLSM 100
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -1
Query: 485 QVITKSYHHLLNLLGQLSCGSHDQ 414
+++ KSYH+L N QLS + DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1052
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 318 VIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTRELAQ 446
++AQA+ GK+ +I +Q +RE + I R+LA+
Sbjct: 123 MVAQAKEKKGKHKQSTIEHYEQCSRRVRELSSKIWLIERKLAE 165
>SPBC1709.17 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 339 GTGKNATFSISILQQI----DTSIRECQALIMAP-TRELAQQIQ 455
G G F+ SILQQI + SI +C + +P R + ++IQ
Sbjct: 89 GKGSTCAFTSSILQQIQKSGERSIPKCIGMYTSPHLRSVCERIQ 132
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -2
Query: 691 MDLVLETSGQHFISFIKNKKFDGVGMKRTTSYHI 590
+D V E HF F+KN+ D + +R H+
Sbjct: 476 LDAVYERECNHFKKFVKNELKDSLESQRVDLRHL 509
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +2
Query: 530 DIRQLESGVHVVVGTPGRVYDMITR--RALHANTIKLFVLDEADEMLSRGFKDQ 685
D+R +ESGV+ + T G YD + L+ + IK V E M G+ D+
Sbjct: 396 DVRYIESGVNRFIATSG--YDGCVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDR 447
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,433,520
Number of Sequences: 5004
Number of extensions: 77698
Number of successful extensions: 273
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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