Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00158
(761 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 124 6e-29
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 122 3e-28
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 121 6e-28
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 120 8e-28
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 107 6e-24
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 80 1e-15
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 80 1e-15
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 80 1e-15
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 79 2e-15
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 76 2e-14
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 75 4e-14
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 75 4e-14
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 71 6e-13
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 71 6e-13
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 71 1e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 71 1e-12
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 70 1e-12
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 70 1e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 70 2e-12
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 69 3e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 69 3e-12
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 69 5e-12
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 69 5e-12
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 68 6e-12
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 67 1e-11
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 66 2e-11
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 66 2e-11
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 66 2e-11
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 66 2e-11
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 66 2e-11
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 64 1e-10
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 62 4e-10
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 62 5e-10
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 60 1e-09
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 60 1e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 60 2e-09
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 60 2e-09
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 59 3e-09
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 58 5e-09
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 58 6e-09
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 58 8e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 58 8e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 57 1e-08
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 54 8e-08
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 53 2e-07
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 52 4e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 50 2e-06
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 50 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 48 5e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 7e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 48 7e-06
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 48 9e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 45 5e-05
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 42 3e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 41 8e-04
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 40 0.002
At2g28600.1 68415.m03476 expressed protein 40 0.002
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 37 0.013
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 36 0.022
At2g31470.1 68415.m03844 F-box family protein contains F-box dom... 34 0.12
At1g76930.2 68414.m08956 proline-rich extensin-like family prote... 32 0.36
At1g76930.1 68414.m08955 proline-rich extensin-like family prote... 32 0.36
At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly ... 29 3.4
At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger) fa... 29 4.5
At1g15140.3 68414.m01810 oxidoreductase NAD-binding domain-conta... 29 4.5
At1g15140.2 68414.m01809 oxidoreductase NAD-binding domain-conta... 29 4.5
At1g15140.1 68414.m01808 oxidoreductase NAD-binding domain-conta... 29 4.5
At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.9
At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR... 28 7.8
At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR... 28 7.8
At2g43110.1 68415.m05352 expressed protein 28 7.8
At1g75640.1 68414.m08788 leucine-rich repeat family protein / pr... 28 7.8
At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein ... 28 7.8
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 124 bits (299), Expect = 6e-29
Identities = 58/85 (68%), Positives = 70/85 (82%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPSAIQQR I+P +G DVI QAQSGTGK ATF +LQQ+D S+ +CQAL++APTR
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTR 117
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELAQQI+KV+ ALGD+L K HAC+
Sbjct: 118 ELAQQIEKVMRALGDYLGVKVHACV 142
Score = 117 bits (282), Expect = 7e-27
Identities = 54/79 (68%), Positives = 69/79 (87%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT+VRED R L++GVHVVVGTPGRV+DM+ R++L A+ IK+FVLDEADEMLSRGFKDQI
Sbjct: 143 GGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQI 202
Query: 689 HDVFKMLSADVQVILLSAT 745
+D+F++L +QV + SAT
Sbjct: 203 YDIFQLLPPKIQVGVFSAT 221
Score = 35.9 bits (79), Expect = 0.029
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = +1
Query: 178 TDWDQVVETFDDMNLKEELLRGIYA 252
T +D V E+FD M L+E LLRGIYA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYA 56
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 122 bits (293), Expect = 3e-28
Identities = 57/85 (67%), Positives = 69/85 (81%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPSAIQQR I+P +G DVI QAQSGTGK ATF +LQQ+D S+ +CQAL++APTR
Sbjct: 60 GFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTR 119
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELAQQI+KV+ ALGD+L K AC+
Sbjct: 120 ELAQQIEKVMRALGDYLGVKAQACV 144
Score = 119 bits (286), Expect = 2e-27
Identities = 55/79 (69%), Positives = 70/79 (88%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT+VRED R L+SGVHVVVGTPGRV+D++ R++L A+ IK+FVLDEADEMLSRGFKDQI
Sbjct: 145 GGTSVREDQRVLQSGVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQI 204
Query: 689 HDVFKMLSADVQVILLSAT 745
+D+F++L + VQV + SAT
Sbjct: 205 YDIFQLLPSKVQVGVFSAT 223
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/28 (53%), Positives = 22/28 (78%)
Frame = +1
Query: 169 TLDTDWDQVVETFDDMNLKEELLRGIYA 252
T T++D+V ++FD M L+ +LLRGIYA
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYA 58
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 121 bits (291), Expect = 6e-28
Identities = 56/85 (65%), Positives = 69/85 (81%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPSAIQQR I+P +G DVI QAQSGTGK ATF +LQQ+D ++ +CQAL++APTR
Sbjct: 58 GFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTR 117
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELAQQI+KV+ ALGD+ K HAC+
Sbjct: 118 ELAQQIEKVMRALGDYQGVKVHACV 142
Score = 115 bits (276), Expect = 4e-26
Identities = 53/79 (67%), Positives = 68/79 (86%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT+VRED R L++GVHVVVGTPGRV+DM+ R++L + IK+FVLDEADEMLSRGFKDQI
Sbjct: 143 GGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQI 202
Query: 689 HDVFKMLSADVQVILLSAT 745
+D+F++L +QV + SAT
Sbjct: 203 YDIFQLLPPKIQVGVFSAT 221
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = +1
Query: 178 TDWDQVVETFDDMNLKEELLRGIYA 252
T +D+V E+FD M L+E LLRGIYA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYA 56
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 120 bits (290), Expect = 8e-28
Identities = 55/85 (64%), Positives = 69/85 (81%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPSAIQQRA+MP +QGRDVIAQAQSGTGK + ++S+ Q +DTS RE QALI++PTR
Sbjct: 54 GFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTR 113
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELA Q +K + A+G H N + HAC+
Sbjct: 114 ELATQTEKTIQAIGLHANIQAHACI 138
Score = 113 bits (272), Expect = 1e-25
Identities = 54/79 (68%), Positives = 64/79 (81%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG +V EDIR+LE GVHVV GTPGRV DMI RR+L IKL +LDE+DEMLSRGFKDQI
Sbjct: 139 GGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQI 198
Query: 689 HDVFKMLSADVQVILLSAT 745
+DV++ L D+QV L+SAT
Sbjct: 199 YDVYRYLPPDLQVCLVSAT 217
Score = 31.1 bits (67), Expect = 0.84
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +1
Query: 178 TDWDQVVETFDDMNLKEELLRGIY 249
TD + + +F+DM +KE++LRG+Y
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVY 51
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 107 bits (258), Expect = 6e-24
Identities = 49/79 (62%), Positives = 62/79 (78%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG ++ EDI++LE GVH V GTPGRVYDMI R +L +KL VLDE+DEMLS+G KDQI
Sbjct: 126 GGKSIGEDIKKLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQI 185
Query: 689 HDVFKMLSADVQVILLSAT 745
+DV++ L D+QV L+SAT
Sbjct: 186 YDVYRALPHDIQVCLISAT 204
Score = 104 bits (249), Expect = 7e-23
Identities = 45/85 (52%), Positives = 66/85 (77%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
G++KPS IQQRA++P ++GRDVIAQAQSGTGK + +IS+ Q ++ S R+ Q L+++P+R
Sbjct: 41 GYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSR 100
Query: 435 ELAQQIQKVVIALGDHLNAKCHACM 509
ELA Q +K + A+G H N + HAC+
Sbjct: 101 ELASQTEKTIQAIGAHTNIQAHACI 125
Score = 27.9 bits (59), Expect = 7.8
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = +1
Query: 196 VETFDDMNLKEELLRGIY 249
+++FDDM + +++LRG+Y
Sbjct: 21 IKSFDDMGMNDKVLRGVY 38
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE+PS IQ+ +I + GRD++A+A++GTGK A F I +L++ID QA+I+ PTR
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTR 209
Query: 435 ELAQQIQKVVIALGDHL 485
ELA Q +V LG HL
Sbjct: 210 ELALQTSQVCKELGKHL 226
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/79 (35%), Positives = 49/79 (62%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT++++DI +L VH++VGTPGR+ D+ + + V+DEAD++LS+ F+ +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 689 HDVFKMLSADVQVILLSAT 745
+ L Q+++ SAT
Sbjct: 295 EHLISFLPESRQILMFSAT 313
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 80.2 bits (189), Expect = 1e-15
Identities = 38/77 (49%), Positives = 53/77 (68%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE+PS IQ+ +I + GRD++A+A++GTGK A F I +L++ID QA+I+ PTR
Sbjct: 150 GFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTR 209
Query: 435 ELAQQIQKVVIALGDHL 485
ELA Q +V LG HL
Sbjct: 210 ELALQTSQVCKELGKHL 226
Score = 65.3 bits (152), Expect = 4e-11
Identities = 28/79 (35%), Positives = 49/79 (62%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT++++DI +L VH++VGTPGR+ D+ + + V+DEAD++LS+ F+ +
Sbjct: 235 GGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSV 294
Query: 689 HDVFKMLSADVQVILLSAT 745
+ L Q+++ SAT
Sbjct: 295 EHLISFLPESRQILMFSAT 313
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 80.2 bits (189), Expect = 1e-15
Identities = 37/82 (45%), Positives = 55/82 (67%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GGT + + +RQL+ GV V VGTPGRV D++ R AL+ + ++ VLDEAD+ML GF
Sbjct: 209 CLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 268
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
+ + + + L Q ++ SAT
Sbjct: 269 EDVEIILEKLPEKRQSMMFSAT 290
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI------DTSIRECQAL 416
G EK IQ+ + P ++GRD+I +A++GTGK F I I+ +I R L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 417 IMAPTRELAQQIQK 458
++APTRELA+Q++K
Sbjct: 183 VLAPTRELARQVEK 196
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GGT + + +R+L G+ V VGTPGR+ D++ R AL+ + ++ VLDEAD+ML GF
Sbjct: 221 CLYGGTPIGQQMRELNYGIDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFA 280
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
+ + + + L A Q ++ SAT
Sbjct: 281 EDVEIILQKLPAKRQSMMFSAT 302
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/74 (40%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI------DTSIRECQAL 416
G EK IQ+ + P ++GRD+I +A++GTGK F I I+ +I + Q L
Sbjct: 135 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCL 194
Query: 417 IMAPTRELAQQIQK 458
++APTRELA+Q++K
Sbjct: 195 VLAPTRELARQVEK 208
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPS IQ+ +I + G D++A+A++GTGK F I +L++ID + QA+I+ PTR
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTR 202
Query: 435 ELAQQIQKVVIALGDHLN 488
ELA Q +V L +LN
Sbjct: 203 ELALQTSQVCKELSKYLN 220
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/79 (36%), Positives = 50/79 (63%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT++R+DI +L VH++VGTPGR+ D+ + + V+DEAD++LS F+ +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 689 HDVFKMLSADVQVILLSAT 745
++ + L + Q ++ SAT
Sbjct: 288 EELIQFLPQNRQFLMFSAT 306
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 76.2 bits (179), Expect = 2e-14
Identities = 36/78 (46%), Positives = 52/78 (66%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPS IQ+ +I + G D++A+A++GTGK F I +L++ID + QA+I+ PTR
Sbjct: 143 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTR 202
Query: 435 ELAQQIQKVVIALGDHLN 488
ELA Q +V L +LN
Sbjct: 203 ELALQTSQVCKELSKYLN 220
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/79 (36%), Positives = 50/79 (63%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT++R+DI +L VH++VGTPGR+ D+ + + V+DEAD++LS F+ +
Sbjct: 228 GGTSLRDDIMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSL 287
Query: 689 HDVFKMLSADVQVILLSAT 745
++ + L + Q ++ SAT
Sbjct: 288 EELIQFLPQNRQFLMFSAT 306
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG + + +++ GV +++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+
Sbjct: 222 GGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQV 281
Query: 689 HDVFKMLSADVQVILLSAT 745
+F+ LS QV+L SAT
Sbjct: 282 MQIFQALS-QPQVLLFSAT 299
Score = 51.6 bits (118), Expect = 6e-07
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDT--------SIRECQ 410
G++ P+ IQ +AI + G+ ++A A +G+GK A+F + I+ + T R
Sbjct: 129 GYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPL 188
Query: 411 ALIMAPTRELAQQIQKVVIALGDHLNAKCHACMVA--PMSVKIF 536
A+++APTREL Q++ LG L K A +V PMS +++
Sbjct: 189 AMVLAPTRELCVQVEDQAKMLGKGLPFKT-ALVVGGDPMSGQLY 231
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 75.4 bits (177), Expect = 4e-14
Identities = 34/79 (43%), Positives = 53/79 (67%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG + + +++ GV +++GTPGRV D++++ + + I FVLDE D ML RGF+DQ+
Sbjct: 85 GGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQV 144
Query: 689 HDVFKMLSADVQVILLSAT 745
+F+ LS QV+L SAT
Sbjct: 145 MQIFQALS-QPQVLLFSAT 162
Score = 41.9 bits (94), Expect = 4e-04
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Frame = +3
Query: 285 RAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDT--------SIRECQALIMAPTREL 440
+AI + G+ ++A A +G+GK A+F + I+ + T R A+++APTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 441 AQQIQKVVIALGDHLNAKCHACMVA--PMSVKIF 536
Q++ LG L K A +V PMS +++
Sbjct: 62 CVQVEDQAKMLGKGLPFKT-ALVVGGDPMSGQLY 94
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG ++R + ++ GVH+VV TPGR+ DM+ ++ + + + LDEAD ++ GF+D I
Sbjct: 264 GGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDI 323
Query: 689 HDVFKMLSADVQVILLSAT 745
+VF + Q +L SAT
Sbjct: 324 REVFDHFKSQRQTLLFSAT 342
Score = 36.7 bits (81), Expect = 0.017
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATF-----SISILQQIDTSIRECQ--- 410
G +P+ IQ + + + GRD+I A +G+GK F I++ +++ I +
Sbjct: 165 GIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI 224
Query: 411 ALIMAPTRELAQQIQKVV 464
LI+ P+RELA+Q +VV
Sbjct: 225 GLIVCPSRELARQTYEVV 242
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 71.3 bits (167), Expect = 6e-13
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFEKPS IQ+ +I + G D++A+A++GTGK F I L++ID QA+I+ PTR
Sbjct: 173 GFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTR 232
Query: 435 ELAQQIQKVVIALGDHL 485
ELA Q +V L +L
Sbjct: 233 ELALQTSQVCKELSKYL 249
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/79 (37%), Positives = 50/79 (63%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GGT++R+DI +L VH++VGTPGR+ D+ + + V+DEAD++LS F+ I
Sbjct: 258 GGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSI 317
Query: 689 HDVFKMLSADVQVILLSAT 745
++ + L Q+++ SAT
Sbjct: 318 EELIQFLPESRQILMFSAT 336
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/82 (41%), Positives = 50/82 (60%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG + L GV VVVGTPGR+ D+I R+L ++ VLDEAD+ML+ GF+
Sbjct: 211 CVYGGVSYTIQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFE 270
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
+ + + + L Q +L SAT
Sbjct: 271 EAVESILENLPTKRQSMLFSAT 292
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/101 (33%), Positives = 59/101 (58%), Gaps = 10/101 (9%)
Frame = +3
Query: 225 RRIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQID----- 389
+R+ E + G IQ+ ++P +QGRD+IA+A++GTGK F I I++++
Sbjct: 111 QRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEEAGD 170
Query: 390 -TSIREC----QALIMAPTRELAQQIQKVVIALGDHLNAKC 497
T+ R + L++APTRELA+Q++K + +L+ C
Sbjct: 171 YTAFRRSGRLPKFLVLAPTRELAKQVEKEIKESAPYLSTVC 211
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 70.5 bits (165), Expect = 1e-12
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG ++R + ++ GVH+VV TPGR+ D++ ++ + + +L LDEAD ++ GF+D I
Sbjct: 215 GGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDI 274
Query: 689 HDVFKMLSADVQVILLSAT 745
VF + Q +L SAT
Sbjct: 275 RHVFDHFKSQRQTLLFSAT 293
Score = 37.1 bits (82), Expect = 0.013
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISIL-----QQIDTSIRECQ--- 410
G P+ IQ + + + GRD+I A +G+GK F + ++ ++I I +
Sbjct: 116 GIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPI 175
Query: 411 ALIMAPTRELAQQIQKVV 464
AL++ P+RELA+Q VV
Sbjct: 176 ALVICPSRELAKQTYDVV 193
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+
Sbjct: 271 CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFE 330
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + D Q +L SAT
Sbjct: 331 PQIRKIVSQIRPDRQTLLWSAT 352
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ 410
I+E +LGF +P+ IQ + ++GRD+I A++G+GK + + L + R Q
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 235
Query: 411 -----ALIMAPTRELAQQIQK 458
LI+APTRELA QIQ+
Sbjct: 236 DDGPIVLILAPTRELAVQIQE 256
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 70.1 bits (164), Expect = 1e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG IR L GV +V+ TPGR+ DM+ + + + VLDEAD ML GF+
Sbjct: 271 CIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFE 330
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + D Q +L SAT
Sbjct: 331 PQIRKIVSQIRPDRQTLLWSAT 352
Score = 53.6 bits (123), Expect = 1e-07
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 5/81 (6%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ 410
I+E +LGF +P+ IQ + ++GRD+I A++G+GK + + L + R Q
Sbjct: 176 ILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQ 235
Query: 411 -----ALIMAPTRELAQQIQK 458
LI+APTRELA QIQ+
Sbjct: 236 DDGPIVLILAPTRELAVQIQE 256
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG +R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + K + Q ++ +AT
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTAT 344
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSIS---ILQQIDTSIRECQA-LIM 422
GF P+ IQ ++ +QGRD++A A++G+GK + I LQ+I R L++
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 423 APTRELAQQIQKVVIALGDHLNAKC 497
+PTRELA QIQ+ + G C
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISC 261
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG +R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + K + Q ++ +AT
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTAT 344
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSIS---ILQQIDTSIRECQA-LIM 422
GF P+ IQ ++ +QGRD++A A++G+GK + I LQ+I R L++
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 423 APTRELAQQIQKVVIALGDHLNAKC 497
+PTRELA QIQ+ + G C
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISC 261
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 69.7 bits (163), Expect = 2e-12
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG +R LE G +VV TPGR+ D++ R + I VLDEAD ML GF+
Sbjct: 263 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFE 322
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + K + Q ++ +AT
Sbjct: 323 PQIRKIVKEIPTKRQTLMYTAT 344
Score = 51.6 bits (118), Expect = 6e-07
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSIS---ILQQIDTSIRECQA-LIM 422
GF P+ IQ ++ +QGRD++A A++G+GK + I LQ+I R L++
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 423 APTRELAQQIQKVVIALGDHLNAKC 497
+PTRELA QIQ+ + G C
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISC 261
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/77 (46%), Positives = 45/77 (58%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE PS +Q I I G DVI QA+SG GK A F +S LQQI+ S + AL++ TR
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTR 124
Query: 435 ELAQQIQKVVIALGDHL 485
ELA QI + +L
Sbjct: 125 ELAYQICNEFVRFSTYL 141
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +2
Query: 506 HGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGF 676
+GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML S
Sbjct: 150 YGGVNIKIHKDLLKNECP-HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDM 208
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ + ++FKM D QV++ SAT
Sbjct: 209 RRDVQEIFKMTPHDKQVMMFSAT 231
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 68.9 bits (161), Expect = 3e-12
Identities = 36/77 (46%), Positives = 45/77 (58%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
GFE PS +Q I I G DVI QA+SG GK A F +S LQQI+ S + AL++ TR
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTR 124
Query: 435 ELAQQIQKVVIALGDHL 485
ELA QI + +L
Sbjct: 125 ELAYQICNEFVRFSTYL 141
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +2
Query: 506 HGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGF 676
+GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML S
Sbjct: 150 YGGVNIKIHKDLLKNECP-HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDM 208
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ + ++FKM D QV++ SAT
Sbjct: 209 RRDVQEIFKMTPHDKQVMMFSAT 231
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 68.5 bits (160), Expect = 5e-12
Identities = 30/82 (36%), Positives = 49/82 (59%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG++ I + SGV +V+GTPGR+ D+I L + + VLDEAD ML GF+
Sbjct: 224 CVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFE 283
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
+ + + + Q+++ SAT
Sbjct: 284 EPVRFILSNTNKVRQMVMFSAT 305
Score = 45.6 bits (103), Expect = 4e-05
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIREC---------Q 410
FEKPS IQ + GRD+I A++G+GK F I + + ++
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 411 ALIMAPTRELAQQIQKVVIALGDHLNAK 494
L+++PTRELA QI V+ G+ K
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLK 221
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 68.5 bits (160), Expect = 5e-12
Identities = 35/88 (39%), Positives = 51/88 (57%)
Frame = +3
Query: 234 VERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQA 413
VE LG KP+ +Q + + GRDV+ AQ+G+GK A F++ IL ++ A
Sbjct: 70 VETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDPYGVFA 129
Query: 414 LIMAPTRELAQQIQKVVIALGDHLNAKC 497
L++ PTRELA Q+ + ALG LN +C
Sbjct: 130 LVVTPTRELAFQLAEQFKALGSCLNLRC 157
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA----LHANTIKLFVLDEADEMLSRGF 676
GG ++ L S H+V+ TPGR+ ++ + + T K VLDEAD +L GF
Sbjct: 162 GGMDMLTQTMSLVSRPHIVITTPGRIKVLLENNPDVPPVFSRT-KFLVLDEADRVLDVGF 220
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+D++ +F+ L Q +L SAT
Sbjct: 221 QDELRTIFQCLPKSRQTLLFSAT 243
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 68.1 bits (159), Expect = 6e-12
Identities = 31/81 (38%), Positives = 47/81 (58%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKD 682
++GG + E ++L++G +VV TPGR+ DM+ +AL VLDEAD M GF+
Sbjct: 335 VYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEP 394
Query: 683 QIHDVFKMLSADVQVILLSAT 745
Q+ + + D Q +L SAT
Sbjct: 395 QVRSIVGQIRPDRQTLLFSAT 415
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/70 (41%), Positives = 44/70 (62%), Gaps = 5/70 (7%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---ALIM 422
+EKP+AIQ +A+ + GRDVI A++G+GK A F + ++ I ++ + +I
Sbjct: 248 YEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVIC 307
Query: 423 APTRELAQQI 452
APTRELA QI
Sbjct: 308 APTRELAHQI 317
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/82 (37%), Positives = 44/82 (53%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
C++GG +R L+ GV +V+ TPGR+ DM+ + + VLDEAD ML GF
Sbjct: 205 CIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFD 264
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + D Q + SAT
Sbjct: 265 PQIRKIVSHIRPDRQTLYWSAT 286
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ 410
++E + GF +P+ IQ + ++GRD+I A++G+GK ++ + + ++
Sbjct: 110 VLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAH 169
Query: 411 -----ALIMAPTRELAQQIQKVVIALGDHLNAK 494
L++APTRELA QIQ+ G K
Sbjct: 170 GDGPIVLVLAPTRELAVQIQQEASKFGSSSKIK 202
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/82 (35%), Positives = 48/82 (58%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG ++++E GV +VV TPGR+ D++ + + + + VLDEAD ML GF+
Sbjct: 334 CLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFE 393
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + Q ++ +AT
Sbjct: 394 PQIRKIVNEVPTKRQTLMYTAT 415
Score = 51.2 bits (117), Expect = 7e-07
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSI---SILQQIDTSIRECQA-LIM 422
GF PS IQ ++ +Q RD++A A++G+GK + I LQ+I R L++
Sbjct: 248 GFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRMGPTILVL 307
Query: 423 APTRELAQQIQKVVIALGDHLNAKCHACM 509
+PTRELA QIQ + G C AC+
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISC-ACL 335
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/84 (39%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +2
Query: 506 HGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQ 685
+GGT V + IR+LE GV ++V TPGR+ D++ R + ++ LDEAD ML GF+ Q
Sbjct: 259 YGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQ 318
Query: 686 IHDVFKMLSADV----QVILLSAT 745
I + + + Q +L SAT
Sbjct: 319 IRKIVQQMDMPPPGVRQTMLFSAT 342
Score = 46.0 bits (104), Expect = 3e-05
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---- 410
R + KP+ +Q+ AI GRD++A AQ+G+GK A F I+ I D I +
Sbjct: 163 RCKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRG 222
Query: 411 ----ALIMAPTRELAQQI 452
A+I++PTRELA QI
Sbjct: 223 VYPLAVILSPTRELACQI 240
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 66.5 bits (155), Expect = 2e-11
Identities = 30/82 (36%), Positives = 47/82 (57%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG +++LE G +VV TPGR+ D++ + + + L VLDEAD ML GF+
Sbjct: 540 CLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFE 599
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
QI + + Q ++ +AT
Sbjct: 600 PQIRKIVNEIPPRRQTLMYTAT 621
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSIS---ILQQIDTSIR 401
I+ + GF P+ IQ + +Q RD++A A++G+GK + I +L+ R
Sbjct: 446 ILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR 505
Query: 402 E-CQALIMAPTRELAQQIQKVVIALGDHLNAKC 497
LI+APTRELA QIQ + G C
Sbjct: 506 NGPTVLILAPTRELATQIQDEALRFGRSSRISC 538
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 4/84 (4%)
Frame = +2
Query: 506 HGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQ 685
+GGT + + +R+LE GV ++V TPGR+ D++ R + I+ LDEAD ML GF+ Q
Sbjct: 272 YGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 331
Query: 686 IHDVFKMLSADV----QVILLSAT 745
I + + + Q +L SAT
Sbjct: 332 IRKIVEQMDMPPRGVRQTLLFSAT 355
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 10/78 (12%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---- 410
R + KP+ +Q+ AI ++GRD++A AQ+G+GK A F I+ I D ++ +
Sbjct: 176 RCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRT 235
Query: 411 ----ALIMAPTRELAQQI 452
A+I++PTRELA QI
Sbjct: 236 VYPLAVILSPTRELASQI 253
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 66.1 bits (154), Expect = 2e-11
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Frame = +2
Query: 500 CLHGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
CL+GG + +L+ GV +VVGTPGR+ D I R+ L + ++ VLDEADEML GF
Sbjct: 207 CLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFV 266
Query: 680 DQIHDVFKML--SADVQVILLSAT 745
+ + + + S VQ +L SAT
Sbjct: 267 EDVELILGKVEDSTKVQTLLFSAT 290
Score = 35.1 bits (77), Expect = 0.051
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSI----------RE 404
G E IQ + G D++ +A++G GK F + IL+ + R
Sbjct: 115 GIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRS 174
Query: 405 CQALIMAPTRELAQQIQKVVIALGDHL 485
L++ PTRELA+Q+ A G L
Sbjct: 175 PSVLVLLPTRELAKQVAADFDAYGGSL 201
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +2
Query: 506 HGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQ 685
+GGT + + +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ Q
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 323
Query: 686 IHDVFKMLSADV----QVILLSAT 745
I + + + Q +L SAT
Sbjct: 324 IRKIVEQMDMPPRGVRQTMLFSAT 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---- 410
R + +P+ +Q+ AI + RD++A AQ+G+GK A F I+ I D + +
Sbjct: 168 RCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRA 227
Query: 411 ----ALIMAPTRELAQQI 452
A+I++PTRELA QI
Sbjct: 228 VYPFAVILSPTRELACQI 245
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 64.1 bits (149), Expect = 1e-10
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Frame = +2
Query: 506 HGGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQ 685
+GGT + + +R+LE G ++V TPGR+ D++ R + I+ LDEAD ML GF+ Q
Sbjct: 264 YGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQ 323
Query: 686 IHDVFKMLSADV----QVILLSAT 745
I + + + Q +L SAT
Sbjct: 324 IRKIVEQMDMPPRGVRQTMLFSAT 347
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 10/78 (12%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--DTSIRECQ---- 410
R + +P+ +Q+ AI + RD++A AQ+G+GK A F I+ I D + +
Sbjct: 168 RCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRA 227
Query: 411 ----ALIMAPTRELAQQI 452
A+I++PTRELA QI
Sbjct: 228 VYPFAVILSPTRELACQI 245
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 62.1 bits (144), Expect = 4e-10
Identities = 34/94 (36%), Positives = 47/94 (50%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ 410
I+ R +GF P+ IQ+ A+ GRD I AQ+G+GK T+ + I I+ Q
Sbjct: 87 ILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQ 146
Query: 411 ALIMAPTRELAQQIQKVVIALGDHLNAKCHACMV 512
A+I+ PTREL Q+ KV L C V
Sbjct: 147 AVIVVPTRELGMQVTKVARMLAAKSEIDVKGCTV 180
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 61.7 bits (143), Expect = 5e-10
Identities = 33/81 (40%), Positives = 52/81 (64%), Gaps = 3/81 (3%)
Frame = +3
Query: 243 HIRLGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKNATFSISILQQIDTSIRECQA 413
++ + FEKPS IQ ++ P I + +IAQA +G+GK F + +L ++D ++RE QA
Sbjct: 107 YVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLGMLSRVDPTLREPQA 165
Query: 414 LIMAPTRELAQQIQKVVIALG 476
L + PTRELA Q +V+ +G
Sbjct: 166 LCICPTRELANQNMEVLQKMG 186
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Frame = +2
Query: 557 HVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSR-GFKDQIHDVFK---MLSADVQ 724
HVV+GTPG + + + L N +K+ V DEAD ML+ GF+D + K ++ + Q
Sbjct: 216 HVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDIGRVNPNFQ 275
Query: 725 VILLSAT 745
V+L SAT
Sbjct: 276 VLLFSAT 282
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/83 (38%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +2
Query: 506 HGGTNVR--EDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEML-SRGF 676
+GG N++ +D+ + E H+VVGTPGRV + + L ++ F+LDE D+ML S
Sbjct: 67 YGGVNIKIHKDLLKNECP-HIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDM 125
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ + ++FKM D QV++ SAT
Sbjct: 126 RRDVQEIFKMTPHDKQVMMFSAT 148
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 315 DVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTRELAQQIQKVVIALGDHL 485
DVI QA+SG GK A F +S LQQI+ S + AL++ TRELA QI + +L
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYL 58
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI---DTSIRECQALIM 422
LG++KP+ IQ I + GRD+ A A +G+GK A F++ L+++ + + LI+
Sbjct: 185 LGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLIL 244
Query: 423 APTRELAQQIQKVVIALGDHLNAKCHACMVAPMSVK 530
PTRELA QI ++ L + KC +V +SV+
Sbjct: 245 TPTRELAVQIHSMIQNLAQFTDIKC-GLIVGGLSVR 279
Score = 51.2 bits (117), Expect = 7e-07
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRR-ALHANTIKLFVLDEADEMLSRGFKDQ 685
GG +VRE L S +VV TPGR+ D + ++ + + + +LDEAD +L GF +
Sbjct: 274 GGLSVREQEVVLRSMPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATE 333
Query: 686 IHDVFKMLSADVQVILLSAT 745
I ++ ++ Q +L SAT
Sbjct: 334 ITELVRLCPKRRQTMLFSAT 353
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 12/104 (11%)
Frame = +3
Query: 222 QRRIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIR 401
+ +V+ RLG++ PS IQ A+ ++G+DVI AQ+G+GK F+I ILQ + +
Sbjct: 17 REELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVY 76
Query: 402 ECQ------------ALIMAPTRELAQQIQKVVIALGDHLNAKC 497
+ + A +++PTRELA QI + ALG ++ +C
Sbjct: 77 DSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRC 120
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Frame = +2
Query: 479 SLEC*MPCLHGGTNVREDIRQLESGVHVVVGTPGRVYD-MITRRALHANTIKLFVLDEAD 655
SL C L GG + + L HV+V TPGR++D M + ++K VLDEAD
Sbjct: 117 SLRC--AVLVGGIDRMQQTIALGKRPHVIVATPGRLWDHMSDTKGFSLKSLKYLVLDEAD 174
Query: 656 EMLSRGFKDQIHDVFKMLSADVQVILLSAT 745
+L+ F+ ++ + + + + + L SAT
Sbjct: 175 RLLNEDFEKSLNQILEEIPLERKTFLFSAT 204
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/87 (40%), Positives = 50/87 (57%), Gaps = 8/87 (9%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--------DTSIRE 404
R G++KPS IQ AI +Q RDVI A++G+GK A F + +L I +
Sbjct: 330 RAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEG 389
Query: 405 CQALIMAPTRELAQQIQKVVIALGDHL 485
A++MAPTRELAQQI++ + +L
Sbjct: 390 PYAVVMAPTRELAQQIEEETVKFAHYL 416
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/63 (38%), Positives = 35/63 (55%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG ++ E ++ G +V+ TPGR+ D + RR N VLDEAD M+ GF+ Q+
Sbjct: 425 GGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQV 484
Query: 689 HDV 697
V
Sbjct: 485 AGV 487
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRG 673
++GG+ V + I +L+ G +VV TPGR+ D++ + + + + V+DEAD M G
Sbjct: 503 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMG 562
Query: 674 FKDQIHDVFKMLSADVQVILLSAT 745
F+ QI + + + D Q +L SAT
Sbjct: 563 FEPQITRIVQNIRPDRQTVLFSAT 586
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Frame = +3
Query: 228 RIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI-DTSIRE 404
+I++ +L +EKP IQ +A+ + GRD I A++G+GK F + +L+ I D E
Sbjct: 406 KILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVE 465
Query: 405 CQ----ALIMAPTRELAQQIQKVVIALGDHLNAKC 497
L+MAPTREL QQI + L C
Sbjct: 466 AGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIIC 500
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 59.3 bits (137), Expect = 3e-09
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFK 679
L GG ++ + +L G V++ TPGR+ +++ + T++ V DEAD + GF
Sbjct: 132 LVGGDSMEDQFEELTKGPDVIIATPGRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFA 191
Query: 680 DQIHDVFKMLSADVQVILLSAT 745
+Q+H + LS + Q +L SAT
Sbjct: 192 EQLHQILTQLSENRQTLLFSAT 213
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/76 (36%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRE--CQALIMAP 428
G++ P+ IQ++ + + G DV+A A++G+GK A F I +L+++ + + +ALI++P
Sbjct: 47 GYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSP 106
Query: 429 TRELAQQIQKVVIALG 476
TR+LA+Q K LG
Sbjct: 107 TRDLAEQTLKFTKELG 122
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 58.4 bits (135), Expect = 5e-09
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESGVHVVVGTPGRVYDMI---TRRALHANTIKLFVLDEADEMLSRG 673
++GG+ V + I +L+ G +VV TPGR+ D++ + + + + V+DEAD M G
Sbjct: 636 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMG 695
Query: 674 FKDQIHDVFKMLSADVQVILLSAT 745
F+ QI + + + + Q +L SAT
Sbjct: 696 FEPQITRIIQNIRPERQTVLFSAT 719
Score = 55.2 bits (127), Expect = 4e-08
Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Frame = +3
Query: 228 RIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI-DTSIRE 404
+I++ +L +EKP IQ +A+ + GRD I A++G+GK F + +L+ I D E
Sbjct: 539 KILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVE 598
Query: 405 CQ----ALIMAPTRELAQQIQKVVIALGDHLNAKC 497
L+MAPTREL QQI + L +C
Sbjct: 599 AGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRC 633
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 503 LHGGTNVREDIRQLES-GVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGF 676
L GG V D+ LE G ++++GTPGR+ DM+ R L +++ +LDEAD +L GF
Sbjct: 125 LVGGREVEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGF 184
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ Q++ + L + L SAT
Sbjct: 185 QKQVNYIISRLPKQRRTGLFSAT 207
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTS----- 395
I+E R GFE + +Q I +DV+ A +G+GK F + ++ I S
Sbjct: 27 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
Query: 396 -IRECQALIMAPTRELAQQIQKV 461
+ +I++PTREL+ QI KV
Sbjct: 87 KPHQVMGVIISPTRELSAQIHKV 109
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 57.6 bits (133), Expect = 8e-09
Identities = 31/88 (35%), Positives = 55/88 (62%), Gaps = 6/88 (6%)
Frame = +3
Query: 228 RIVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI---DTSI 398
R++ + G EKP+ IQQ AI ++G+DV+A+A++G+GK + + +LQ++ D+
Sbjct: 56 RLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVS 115
Query: 399 RE---CQALIMAPTRELAQQIQKVVIAL 473
++ A I+ P+REL QQ+ V +L
Sbjct: 116 KKKLAPSAFILVPSRELCQQVYTEVSSL 143
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Frame = +2
Query: 530 DIRQLESGV-HVVVGTPGRVYDMITRRALH----ANTIKLFVLDEADEMLSRGFKDQIHD 694
D+R +G+ ++V TP + L + ++ + VLDEAD +LS G++D +
Sbjct: 164 DMRNALAGLPEILVSTPACIPKCFAAGVLEPTAVSESLSILVLDEADLLLSYGYEDNLRS 223
Query: 695 VFKMLSADVQVILLSATNA 751
V ++ Q +L+SAT +
Sbjct: 224 VTSIIPRRCQCLLMSATTS 242
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQ 685
GG N R + +++ SG ++V+ TPGR+ D + +A +K V+DEAD +L F++
Sbjct: 197 GGNNRRSEAQRIASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEED 256
Query: 686 IHDVFKMLSADVQVILLSAT 745
++ + K+L Q L SAT
Sbjct: 257 MNKILKILPKTRQTALFSAT 276
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATF---SISILQQIDTSIRE-CQALI 419
+GF+ + IQ +I P ++G+DV+ A++G+GK F ++ +L + S R ++
Sbjct: 107 MGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGVIV 166
Query: 420 MAPTRELAQQIQKVVIALGDH 482
+ PTRELA Q + V L H
Sbjct: 167 ICPTRELAIQTKNVAEELLKH 187
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 57.2 bits (132), Expect = 1e-08
Identities = 30/83 (36%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 503 LHGGTNVREDIRQLES-GVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGF 676
L GG V+ D++ +E G +V++GTPGR+ D++ R L +++ +LDEAD +L GF
Sbjct: 125 LVGGREVKADMKIIEEEGCNVLIGTPGRLSDIMERMEILDFRNLEILILDEADRLLEMGF 184
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ Q++ + L + L SAT
Sbjct: 185 QRQVNYIISRLPKQRRTGLFSAT 207
Score = 34.3 bits (75), Expect = 0.090
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSI---- 398
I+E + FE + +Q I +DV A +G+GK F + +++ + S
Sbjct: 27 IIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP 86
Query: 399 --RECQALIMAPTRELAQQIQKV 461
+ +I++PTREL+ QI V
Sbjct: 87 KPHQVMGVIISPTRELSTQIYNV 109
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 54.4 bits (125), Expect = 8e-08
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSR 670
L GGT R D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L
Sbjct: 487 LIGGTRFRLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDL 546
Query: 671 GFKDQIHDVFKMLSADVQVILLSAT 745
GFK + + L Q +L SAT
Sbjct: 547 GFKRDVEKIIDCLPRQRQSLLFSAT 571
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 9/75 (12%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSI----SILQQIDT-----SIREC 407
G K + +Q + C+ G+D + +A++GTGK+ F + ++L+ +++ +
Sbjct: 394 GIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHKVAPI 453
Query: 408 QALIMAPTRELAQQI 452
LI+ PTRELA QI
Sbjct: 454 FVLILCPTRELASQI 468
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 53.2 bits (122), Expect = 2e-07
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Frame = +2
Query: 521 VREDIRQLES-GVHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHD 694
V D+ LE G ++++GTPGR+ DM+ R L +++ +LDEAD +L GF+ Q++
Sbjct: 124 VEADMNTLEEEGANLLIGTPGRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNY 183
Query: 695 VFKMLSADVQVILLSAT 745
+ L + L SAT
Sbjct: 184 IISRLPKQRRTGLFSAT 200
Score = 43.6 bits (98), Expect = 1e-04
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTS----- 395
I+E R GFE + +Q I +DV+ A +G+GK F + ++ I S
Sbjct: 28 IIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
Query: 396 -IRECQALIMAPTRELAQQIQKVVIAL 473
+ +I++PTREL+ QI KV A+
Sbjct: 88 KPHQVMGVIISPTRELSAQIHKVARAV 114
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Frame = +2
Query: 503 LHGGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRA---LHANTIKLFVLDEADEMLSR 670
L GGT + D ++LES +++ TPGR+ D I ++ +KLF++DEAD +L
Sbjct: 440 LIGGTRFKLDQQRLESEPCQILIATPGRLLDHIENKSGLTSRLMALKLFIVDEADLLLDL 499
Query: 671 GFKDQIHDVFKMLSADVQVILLSAT 745
GF+ + + L Q +L SAT
Sbjct: 500 GFRRDVEKIIDCLPRQRQSLLFSAT 524
Score = 44.4 bits (100), Expect = 8e-05
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 9/75 (12%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSI----SILQQIDT-----SIREC 407
G K + +Q + C+ G+D + +A++GTGK+ F + ++L+ +++ +
Sbjct: 347 GILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVNKVAPI 406
Query: 408 QALIMAPTRELAQQI 452
ALI+ PTRELA QI
Sbjct: 407 FALILCPTRELASQI 421
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 503 LHGGTN-VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
L GG N +R++ ++ +VVGTPGR+ ++ LH + + VLDE DE+LS F+
Sbjct: 226 LVGGANRMRQEEALKKNKPAIVVGTPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFR 285
Query: 680 DQIHDVFK 703
+ IH + +
Sbjct: 286 EDIHRILE 293
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI-------------D 389
R GF P+ +Q A+ I+G D + Q+ +G+GK + + IL +I +
Sbjct: 127 REGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSEN 186
Query: 390 TSIRECQALIMAPTRELAQQIQKVV 464
E QA+I+AP+REL QI + V
Sbjct: 187 DKRTEIQAMIVAPSRELGMQIVREV 211
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +2
Query: 509 GGTNVREDIRQLE-SGVHVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGF 676
GGT + + R+L+ S ++V TPGR+ D I + A +K+ VLDEAD +L GF
Sbjct: 193 GGTKLPTEQRRLQKSPCQILVATPGRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGF 252
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ +I + + Q L SAT
Sbjct: 253 RREIERIIAAVPKQRQTFLFSAT 275
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 8/73 (10%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--------DTSIRECQ 410
GF+ + +Q+ + +QG+D++A+A++GTGK F + ++ + D
Sbjct: 99 GFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHPPII 158
Query: 411 ALIMAPTRELAQQ 449
L++ PTRELA Q
Sbjct: 159 VLVVCPTRELACQ 171
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ------ 410
R+GFE P+ +Q +AI + GRDV+ A +GTGK + ++ + +
Sbjct: 47 RMGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTF 106
Query: 411 ALIMAPTRELAQQIQKVV 464
AL++ PTREL Q+ + +
Sbjct: 107 ALVIVPTRELCLQVYETL 124
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRA--LHANTIKLFVLDEADEMLSRGFKD 682
GG ++ +L G+ +++ TPGR+ D + A +H N ++ + DEAD +L G+
Sbjct: 141 GGEKKAKEKARLRKGISILIATPGRLLDHLKNTASFVHKN-LRWVIFDEADSILELGYGK 199
Query: 683 QIHDVFKMLSA 715
+I + K+L +
Sbjct: 200 EIEQIIKLLGS 210
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQ 685
GG + + L GV+++V TPGR+ D + +K V+DEAD +L + F++
Sbjct: 262 GGEKRKTEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEED 321
Query: 686 IHDVFKMLSADVQVILLSATNA 751
+ + +L Q L SAT +
Sbjct: 322 LKKILNLLPKTRQTSLFSATQS 343
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATF---SISILQQIDTSIRE-CQALI 419
+GF + + IQ +AI P + G DV+ A++G+GK F ++ +L ++ + R L+
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAVELLYRVKFTPRNGTGVLV 231
Query: 420 MAPTRELAQQ 449
+ PTRELA Q
Sbjct: 232 ICPTRELAIQ 241
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/60 (40%), Positives = 32/60 (53%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQI 688
GG+ +R L + + +VVGTPGR+ I + I VLDEAD M RGF +I
Sbjct: 225 GGSRIRPQEDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEI 284
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Frame = +3
Query: 252 LGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI---------DTSIRE 404
L E P+ IQ I ++ + V+ + +G+GK + + I+Q + T R
Sbjct: 130 LNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLPIVQLMREDEANLGKKTKPRR 189
Query: 405 CQALIMAPTRELAQQIQKVVIALGDH 482
+ +++ PTREL++Q+ +V ++ H
Sbjct: 190 PRTVVLCPTRELSEQVYRVAKSISHH 215
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 48.0 bits (109), Expect = 7e-06
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +2
Query: 509 GGTNVREDIRQLESG-VHVVVGTPGRVYDMITRR---ALHANTIKLFVLDEADEMLSRGF 676
GGT + + +++++ ++V TPGR+ D I A +K+ VLDEAD +L GF
Sbjct: 167 GGTRLGLEQKRMQTNPCQILVATPGRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGF 226
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ I + + + Q L SAT
Sbjct: 227 RKDIERIISAVPKERQTFLFSAT 249
Score = 44.4 bits (100), Expect = 8e-05
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--------DTSIRECQ 410
G+E + +Q+ + ++G+DV+A+A++GTGK F + ++ + D
Sbjct: 73 GYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDNKRPPIL 132
Query: 411 ALIMAPTRELAQQ 449
AL++ PTRELA Q
Sbjct: 133 ALVICPTRELANQ 145
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 48.0 bits (109), Expect = 7e-06
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Frame = +2
Query: 509 GGTNVREDIRQLESG-VHVVVGTPGRVYDMITRRALHANT---IKLFVLDEADEMLSRGF 676
GGT + + R++++ ++V TPGR+ D I + A +K+ VLDEAD +L GF
Sbjct: 495 GGTKLPTEQRRMQTNPCQILVATPGRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGF 554
Query: 677 KDQIHDVFKMLSADVQVILLSAT 745
+ I + + Q L SAT
Sbjct: 555 RRDIERIIAAVPKQRQTFLFSAT 577
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--------DTSIRECQ 410
GFE + +Q+ + +QG+DV+A+A++GTGK F + ++ + D+
Sbjct: 401 GFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQPPII 460
Query: 411 ALIMAPTRELAQQ 449
L++ PTRELA Q
Sbjct: 461 VLVVCPTRELASQ 473
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 47.6 bits (108), Expect = 9e-06
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 231 IVERHIRLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQID-TSIREC 407
I+ LGF++P+ IQ++AI + GR+ A A +G+GK F +L ++ S
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPMLIKLKRPSTDGI 211
Query: 408 QALIMAPTRELAQQ 449
+A+I++P RELA Q
Sbjct: 212 RAVILSPARELAAQ 225
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 560 VVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLS 712
V++ TP R+ I + + + ++ VLDE+D++ + QI V K S
Sbjct: 261 VLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLLKQIDCVVKACS 311
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 45.2 bits (102), Expect = 5e-05
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHA---NTIKLFVLDEADEMLSRGFK 679
GG + R+L+ +VV TPGR++++++ H +++ FVLDEAD M+ RG
Sbjct: 315 GGMFSEKQERRLKEKPEIVVATPGRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHF 374
Query: 680 DQIHDVFKML 709
++ + +L
Sbjct: 375 RELQSILDLL 384
Score = 41.5 bits (93), Expect = 6e-04
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAI-MPCIQGRDVIAQAQSGTGKNATFSISILQQI 386
RL F++P+ IQ+ + QG+DVI A++G+GK F + ILQ++
Sbjct: 207 RLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRL 253
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 42.3 bits (95), Expect = 3e-04
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Frame = +3
Query: 258 FEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI--------DTSIREC-Q 410
F++P+ IQ A P I G+ I QSG+GK + + ++Q++ S C +
Sbjct: 394 FDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQRLREEELQGHSKSSPGCPR 453
Query: 411 ALIMAPTRELAQQI 452
+++ PT ELA Q+
Sbjct: 454 VIVLVPTAELASQV 467
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 509 GGTNVREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRG-FKDQ 685
GG R + LE GV V++ TPGR ++ L + ++ +LDE D + F+
Sbjct: 488 GGFRQRTQLENLEQGVDVLIATPGRFTYLMNEGILGLSNLRCAILDEVDILFGDDEFEAA 547
Query: 686 IHDVFKMLSADVQVILLSAT 745
+ ++ Q + ++AT
Sbjct: 548 LQNLINSSPVTAQYLFVTAT 567
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 41.1 bits (92), Expect = 8e-04
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +3
Query: 276 IQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQ----ALIMAPTRELA 443
+Q AI + GRD++ A++G+GK F I IL+++ + +I++PTRELA
Sbjct: 97 VQSAAIPHALCGRDILGAARTGSGKTLAFVIPILEKLHRERWSPEDGVGCIIISPTRELA 156
Query: 444 QQIQKVVIALG 476
Q V+ +G
Sbjct: 157 AQTFGVLNKVG 167
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 554 VHVVVGTPGRVYDMITRRA-LHANTIKLFVLDEADEMLSRGFKDQIHDVFKMLSADVQVI 730
++++V PGR+ + +++ +LDEAD +L FK Q+ + L Q +
Sbjct: 194 MNILVCAPGRLLQHMDETPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTL 253
Query: 731 LLSAT 745
L SAT
Sbjct: 254 LFSAT 258
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 AIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI-DTSIRECQALIMAPTRELAQQ 449
A+ I P RD+ + +G+GK ++++ I+Q + +R +AL++ PTR+LA Q
Sbjct: 50 AVWHETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQ 109
Query: 450 IQKVVIAL 473
++ V A+
Sbjct: 110 VKDVFDAI 117
Score = 37.1 bits (82), Expect = 0.013
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +2
Query: 527 EDIRQ-LESGVHVVVGTPGRVYDMITR-RALHANTIKLFVLDEADEMLSRGFKDQIHDVF 700
+D+ Q LES V ++V TPGR+ D I + ++ V+DE D +L ++ + V
Sbjct: 156 DDLSQNLESAVDILVATPGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVL 215
Query: 701 KM 706
++
Sbjct: 216 QL 217
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/80 (25%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +2
Query: 503 LHGGTNVREDIRQLES-GVHVVVGTPGRVYDMITRRALHANTIKLFVLDEADEMLSRGFK 679
LH G + I L+S +V TP R+ +++T + + + + L V+DE + S G+
Sbjct: 229 LHQGAPLDHQISGLKSVEPEFIVATPERLLEIVTLKGVDISNVSLLVIDELGSLCSGGYL 288
Query: 680 DQIHDVFKMLSADVQVILLS 739
+ + + + +S+ Q I+ +
Sbjct: 289 NAVKSIKQAISSKHQTIVFN 308
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 37.1 bits (82), Expect = 0.013
Identities = 16/44 (36%), Positives = 26/44 (59%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQI 386
GF++PS Q I + G+DVI A++G+GK + I+ Q+
Sbjct: 99 GFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQL 142
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/66 (25%), Positives = 34/66 (51%)
Frame = +3
Query: 249 RLGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAP 428
R+G + Q AI + G++V + +GK+ +++ + +++ C AL + P
Sbjct: 388 RIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVPVFEELCKDTNSC-ALYLFP 446
Query: 429 TRELAQ 446
T+ LAQ
Sbjct: 447 TKALAQ 452
>At2g31470.1 68415.m03844 F-box family protein contains F-box domain
Pfam:PF00646
Length = 387
Score = 33.9 bits (74), Expect = 0.12
Identities = 25/92 (27%), Positives = 40/92 (43%)
Frame = +2
Query: 248 TPRF*KTFCNPATRNNALHPRTRCYRSSPVRNWKKCYFLYIDSTTNRYKHS*MSSFDHGS 427
TP F CNP+T + P+ + + R W +F Y D ++K M+ D G
Sbjct: 140 TPEFVSAICNPSTGQSLTLPKPKTRK----RIWGTSHFGY-DPIEKQFKVLSMNIGD-GV 193
Query: 428 HKRAGPTNSEGGDSSW*SLEC*MPCLHGGTNV 523
+K + SW +EC +P +HG +
Sbjct: 194 YKEHYVLTLGTENLSWRRIECSIPHVHGSKGI 225
>At1g76930.2 68414.m08956 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 256
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 569 PPPHEHHSPVGEYLHGHWCHHASMAFSIQVITKSYHHLLNL-LGQLSCGSHDQSLTFTNA 393
PPP +H+SP Y H HH +Q T +HH L QL H + TN
Sbjct: 151 PPPVKHYSPPPSYTTLH--HHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNT 208
Query: 392 CIDLL 378
+ LL
Sbjct: 209 NLLLL 213
>At1g76930.1 68414.m08955 proline-rich extensin-like family protein
contains extensin-like region, Pfam:PF04554
Length = 293
Score = 32.3 bits (70), Expect = 0.36
Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = -1
Query: 569 PPPHEHHSPVGEYLHGHWCHHASMAFSIQVITKSYHHLLNL-LGQLSCGSHDQSLTFTNA 393
PPP +H+SP Y H HH +Q T +HH L QL H + TN
Sbjct: 151 PPPVKHYSPPPSYTTLH--HHRFTTHLLQSYTTLHHHRFTTHLLQLYTTPHHHPRSTTNT 208
Query: 392 CIDLL 378
+ LL
Sbjct: 209 NLLLL 213
>At1g31360.1 68414.m03838 DNA helicase, putative (RECQl2) nearly
identical to DNA Helicase [Arabidopsis thaliana]
GI:11121445
Length = 705
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 255 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKNATFSISILQQIDTSIRECQALIMAPTR 434
G K A Q+ I + GRDV+ +G GK S+ Q+ +R L+++P
Sbjct: 86 GISKYRANQKEIINAIMTGRDVLVIMAAGGGK------SLCYQLPAMLRGGTTLVVSPLL 139
Query: 435 ELAQQIQKVVIALG 476
L Q + ALG
Sbjct: 140 SLIQDQVMGLAALG 153
>At4g17920.1 68417.m02670 zinc finger (C3HC4-type RING finger)
family protein similar to RING-H2 zinc finger protein
ATL6 [Arabidopsis thaliana] GI:4928403; contains Pfam
profile PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 289
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -1
Query: 671 LWTTFHQLHQEQKV*WCWHEAHDELSYHIHDLECPPPHEHHSP 543
L T +H HQE W E+H DL+ PPP E+ P
Sbjct: 126 LTTCYHVFHQECID--LWFESHRTCPVCRRDLDPPPPPENTKP 166
>At1g15140.3 68414.m01810 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 717 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 574
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.2 68414.m01809 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 271
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 717 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 574
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At1g15140.1 68414.m01808 oxidoreductase NAD-binding
domain-containing protein Contains Pfam profile PF00175:
Oxidoreductase NAD-binding domain; ESTs gb|H76345 and
gb|AA651465 come from this gene
Length = 295
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -3
Query: 717 SADNILKTSWIWSLKPLDNISSASSRTKSLMVLA*SARRVIISYTRPG 574
SA + + + +W+ PL I SA+ + + +A ++ SYTRPG
Sbjct: 47 SAAAVRQDASLWTPAPLSLIESAAESLFHISIDISNAPDLVASYTRPG 94
>At4g14090.1 68417.m02175 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase ;similar
to UDP-glucose:anthocyanin 5-O-glucosyltransferase
GI:4115563 from [Verbena x hybrida]
Length = 456
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 595 HIIYTTWSAHHHMNTTLQLANIFTDIGATM 506
H + T+ A H+N LQLAN GAT+
Sbjct: 13 HYLLVTFPAQGHINPALQLANRLIHHGATV 42
>At4g16950.2 68417.m02557 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1404
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 306 GCKALLRV-AGLQKVFQNLGVYASQQFFFEVHVIEGFDNLIPVGVKCPRVHSRRSIV 139
GC++L+ + + +Q + ++ S ++ +EG NL + V C RV + IV
Sbjct: 651 GCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYLSVDCSRVEGTQGIV 707
>At4g16950.1 68417.m02556 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.; closest
homolog in Col-0 to RPP5 of clutivar Landsberg erecta.
Length = 1449
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 306 GCKALLRV-AGLQKVFQNLGVYASQQFFFEVHVIEGFDNLIPVGVKCPRVHSRRSIV 139
GC++L+ + + +Q + ++ S ++ +EG NL + V C RV + IV
Sbjct: 651 GCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYLSVDCSRVEGTQGIV 707
>At2g43110.1 68415.m05352 expressed protein
Length = 288
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 521 VREDIRQLESGVHVVVGTPGRVYDMITRRALHANTIKLFVLD 646
V E + L+ V++ GTP R+ ++ AL + + + V+D
Sbjct: 191 VEEQVSLLKKRVNIGSGTPNRIKKLVDIEALGLSRLDMIVID 232
>At1g75640.1 68414.m08788 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 1140
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 186 PVGVKCPRVHSRRSIVTTLILRWPIFGILWPIF*HL*TTFNSWGGRHKCNI 34
P+G++CP V RR L++ + G L + F+ W R+K +
Sbjct: 738 PLGIECPNVRRRRRRKLILLVTLAVAGALLLLLCCCGYVFSLWKWRNKLRL 788
>At1g13290.1 68414.m01543 zinc finger (C2H2 type) family protein
contains Pfam domian PF00096: Zinc finger, C2H2 type
Length = 302
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 371 DSTTNRYKHS*MSSFDHGSHKRAGPTNSEGGDSS 472
+ T NR+ + M + HGS R GP + G SS
Sbjct: 107 NKTFNRFNNMQMHMWGHGSQYRKGPESLRGTKSS 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,372,342
Number of Sequences: 28952
Number of extensions: 430160
Number of successful extensions: 1402
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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