Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00155
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)                      129   2e-30
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   3e-28
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)                       120   2e-27
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)                      101   4e-22
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)              96   3e-20
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)                 40   0.003
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)                29   4.9  
SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   6.4  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)                    28   6.4  
SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)              28   8.5  

>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1097

 Score =  129 bits (312), Expect = 2e-30
 Identities = 60/65 (92%), Positives = 63/65 (96%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTYSDNQPGVLIQVFEGER+MT  +NLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL
Sbjct: 429 TFTTYSDNQPGVLIQVFEGERSMTAHNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 488

Query: 690 NVSAI 704
           NVSA+
Sbjct: 489 NVSAV 493



 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +1

Query: 463 STLIKRNTTIPTKQTR 510
           S LIKRN+TIPTKQT+
Sbjct: 413 SVLIKRNSTIPTKQTQ 428


>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score =  122 bits (294), Expect = 3e-28
 Identities = 54/65 (83%), Positives = 63/65 (96%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTYSDNQ  VLIQV+EGER++TKD+NLLGKFEL+GIPPAPRGVPQI+VTFD+D+NGIL
Sbjct: 521 TFTTYSDNQTSVLIQVYEGERSLTKDNNLLGKFELSGIPPAPRGVPQIDVTFDVDSNGIL 580

Query: 690 NVSAI 704
           NVSA+
Sbjct: 581 NVSAV 585



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +1

Query: 472 IKRNTTIPTKQTR 510
           IKRNTTIPTKQT+
Sbjct: 508 IKRNTTIPTKQTQ 520


>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 640

 Score =  120 bits (288), Expect = 2e-27
 Identities = 55/64 (85%), Positives = 60/64 (93%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTYSDNQP V I+VFEGER +TK +NLLGKF+L+GIPPAPRGVPQIEVTFDIDANGIL
Sbjct: 428 TFTTYSDNQPAVTIRVFEGERPLTKHNNLLGKFDLSGIPPAPRGVPQIEVTFDIDANGIL 487

Query: 690 NVSA 701
           NVSA
Sbjct: 488 NVSA 491


>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
          Length = 1327

 Score =  101 bits (243), Expect = 4e-22
 Identities = 48/63 (76%), Positives = 54/63 (85%)
 Frame = +3

Query: 513  FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
            F+T +DNQ  V IQVFEGER MTKD++ LGKF+L GIPPAPRGVPQIEVTF+ID NGIL 
Sbjct: 1123 FSTAADNQNTVTIQVFEGERPMTKDNHPLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILR 1182

Query: 693  VSA 701
            VSA
Sbjct: 1183 VSA 1185


>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 766

 Score = 95.9 bits (228), Expect = 3e-20
 Identities = 44/63 (69%), Positives = 53/63 (84%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F+T +D Q  V I+VF+GER M  D+ LLG+F+L GIPPAPRGVPQ+EVTFDIDANGI+N
Sbjct: 234 FSTAADGQTQVEIKVFQGEREMAIDNKLLGQFQLVGIPPAPRGVPQVEVTFDIDANGIVN 293

Query: 693 VSA 701
           VSA
Sbjct: 294 VSA 296


>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
          Length = 212

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 18/34 (52%), Positives = 25/34 (73%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFEL 614
           F+T +D Q  V I+VF+GER M  D+ LLG+F+L
Sbjct: 179 FSTAADGQTQVEIKVFQGEREMAIDNKLLGQFQL 212


>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 555 VFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           +FE   ++ + S + G  EL   PPA   V ++E +F+   +G+++
Sbjct: 125 IFEPRESVPRQSQVPGAMELLPPPPAVFNVNEVETSFEELKSGLMS 170


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +1

Query: 442 TGAEFGTSTLIKRNTTIPTKQTRHSPPTLITNP 540
           T +   TST   + TT P++QT  SPP   T+P
Sbjct: 688 TSSSQQTSTSPPQTTTSPSQQTSTSPPQTTTSP 720


>SB_58416| Best HMM Match : MrpF_PhaF (HMM E-Value=0.24)
          Length = 421

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/49 (32%), Positives = 31/49 (63%)
 Frame = +3

Query: 240 MGXKSAILFLRGLVGMIAISSHILLFVSKSSVNLV*YFSIIIFAAFLTV 386
           +G  S +L L  L+ +IAI+S I++ ++  +V  +  FS+I  A+F+ +
Sbjct: 168 IGIASLLLLLLPLI-VIAIASMIVIAIASINVIAIACFSVIATASFIVI 215


>SB_5639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1384

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 689 EDTVGIDVEGDLNLRHATRRRWDPGQLEFTEQVAIFGHSTLTLKYL 552
           ED VGID EG+L++R   R      Q + T        +  TLK L
Sbjct: 402 EDDVGIDDEGNLHIRSVGRFNEGTYQCKATRLAGASSTAAFTLKIL 447


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 66  NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 170
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -2

Query: 239 LMRRLRHSQVRGISIKLQEEERERRYNYVPEVSALEHDIIEVDPDTKD 96
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


>SB_55456| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 736

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
 Frame = -2

Query: 206 GISIKLQEEERERRYNYVPEVSALEHDIIEVDPDTKDMLKMLDFNN-----INGLQLTQP 42
           G+    +E +RE    Y   VSA +H +     D +  + +LD N+      +GL +T  
Sbjct: 456 GLVTTARELDRETIATYTLTVSAYDHGVSSRHKDVQLTVNVLDENDNTPQITDGLTITTN 515

Query: 41  ATQGGYGG 18
            ++G  GG
Sbjct: 516 ISEGAGGG 523


>SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 634 GAGGIPVSSNLPSKLLSLVIARSPSNTWM 548
           G GG PV+S   SKL++ VIA   SN+++
Sbjct: 21  GRGGSPVTSRPGSKLINHVIASFQSNSFI 49


>SB_19450| Best HMM Match : GTP_EFTU (HMM E-Value=7.9e-08)
          Length = 926

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 29/117 (24%), Positives = 44/117 (37%)
 Frame = -2

Query: 686 DTVGIDVEGDLNLRHATRRRWDPGQLEFTEQVAIFGHSTLTLKYLDEYSGLVIRVGGECR 507
           DT+ ++       R   R  W PG+L   E+  + G  +L  ++  E   L + V G   
Sbjct: 67  DTISLNENKRRKEREEVRHIWPPGKLVADERFYMIGFMSLLPEHDHE---LPVEV-GVAE 122

Query: 506 VCLVGMVVLRLMSVLVPNSAPVILSKAALYNFSHGSCPD*NRQESGEDYY*KILYKI 336
             L G +   L   + P   P+     A+ N         N     ED Y +IL  I
Sbjct: 123 FTLNGGITRTLHRFIRPGEIPLGFRYEAMSNSEKSHKIPVNGLAKKEDNYRRILLDI 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,178
Number of Sequences: 59808
Number of extensions: 413295
Number of successful extensions: 1061
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)