Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00155
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical pr...   133   1e-31
M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein ( C.ele...   133   1e-31
Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical pr...   120   1e-27
Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical pr...   120   1e-27
U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock prot...   106   2e-23
M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C. el...   106   2e-23
U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock prot...    94   1e-19
AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock pr...    91   5e-19
M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein ( C.ele...    91   9e-19
AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    79   4e-15
Z81113-10|CAB54300.1|  607|Caenorhabditis elegans Hypothetical p...    48   7e-06
Z81059-7|CAB54217.1|  607|Caenorhabditis elegans Hypothetical pr...    48   7e-06
X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.        42   6e-04
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   1.4  
AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical ...    29   4.3  
AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical ...    29   4.3  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   5.7  

>Z80223-1|CAB02319.1|  640|Caenorhabditis elegans Hypothetical
           protein F26D10.3 protein.
          Length = 640

 Score =  133 bits (321), Expect = 1e-31
 Identities = 62/67 (92%), Positives = 65/67 (97%)
 Frame = +3

Query: 501 TDSTFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDAN 680
           T  TFTTYSDNQPGVLIQV+EGERAMTKD+NLLGKFEL+GIPPAPRGVPQIEVTFDIDAN
Sbjct: 425 TAQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDAN 484

Query: 681 GILNVSA 701
           GILNVSA
Sbjct: 485 GILNVSA 491


>M18540-1|AAA28078.1|  640|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 70A gene, complete cds. ).
          Length = 640

 Score =  133 bits (321), Expect = 1e-31
 Identities = 62/67 (92%), Positives = 65/67 (97%)
 Frame = +3

Query: 501 TDSTFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDAN 680
           T  TFTTYSDNQPGVLIQV+EGERAMTKD+NLLGKFEL+GIPPAPRGVPQIEVTFDIDAN
Sbjct: 425 TAQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELSGIPPAPRGVPQIEVTFDIDAN 484

Query: 681 GILNVSA 701
           GILNVSA
Sbjct: 485 GILNVSA 491


>Z83108-5|CAB05508.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.5 protein.
          Length = 645

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/64 (85%), Positives = 61/64 (95%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTY+DNQPGV IQV+EGERAMT+D++ LG FEL+GIPPAPRGVPQIEVTFDIDANGIL
Sbjct: 428 TFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGIL 487

Query: 690 NVSA 701
           NVSA
Sbjct: 488 NVSA 491


>Z83108-4|CAB05507.1|  645|Caenorhabditis elegans Hypothetical
           protein F44E5.4 protein.
          Length = 645

 Score =  120 bits (289), Expect = 1e-27
 Identities = 55/64 (85%), Positives = 61/64 (95%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTY+DNQPGV IQV+EGERAMT+D++ LG FEL+GIPPAPRGVPQIEVTFDIDANGIL
Sbjct: 428 TFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVPQIEVTFDIDANGIL 487

Query: 690 NVSA 701
           NVSA
Sbjct: 488 NVSA 491


>Z81467-1|CAB03871.1|  643|Caenorhabditis elegans Hypothetical
           protein C12C8.1 protein.
          Length = 643

 Score =  120 bits (289), Expect = 1e-27
 Identities = 54/64 (84%), Positives = 61/64 (95%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TFTTY+DNQPGV IQV+EGERAMT+D++ LG FELTGIPPAPRGVPQ++VTFDIDANGIL
Sbjct: 428 TFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELTGIPPAPRGVPQVDVTFDIDANGIL 487

Query: 690 NVSA 701
           NVSA
Sbjct: 488 NVSA 491


>U56965-1|AAB52671.1|  661|Caenorhabditis elegans Heat shock protein
           protein 3 protein.
          Length = 661

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/63 (76%), Positives = 57/63 (90%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F+T +DNQP V IQVFEGER MTKD++ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+
Sbjct: 456 FSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILH 515

Query: 693 VSA 701
           V+A
Sbjct: 516 VTA 518


>M26604-1|AAA28074.1|  661|Caenorhabditis elegans protein ( C.
           elegans BiP (hsp3)gene, complete cds. ).
          Length = 661

 Score =  106 bits (254), Expect = 2e-23
 Identities = 48/63 (76%), Positives = 57/63 (90%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F+T +DNQP V IQVFEGER MTKD++ LGKF+LTG+PPAPRGVPQIEVTF+ID NGIL+
Sbjct: 456 FSTAADNQPTVTIQVFEGERPMTKDNHQLGKFDLTGLPPAPRGVPQIEVTFEIDVNGILH 515

Query: 693 VSA 701
           V+A
Sbjct: 516 VTA 518


>U88315-3|AAB42371.1|  657|Caenorhabditis elegans Heat shock protein
           protein 6 protein.
          Length = 657

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 43/63 (68%), Positives = 51/63 (80%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F+T +D Q  V I+VF+GER M   + LLG+F L GIPPAPRGVPQ+EVTFDIDANGI+N
Sbjct: 451 FSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVN 510

Query: 693 VSA 701
           VSA
Sbjct: 511 VSA 513


>AF000264-1|AAC71123.1|  657|Caenorhabditis elegans Heat shock
           protein protein 4 protein.
          Length = 657

 Score = 91.5 bits (217), Expect = 5e-19
 Identities = 41/63 (65%), Positives = 52/63 (82%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F+T +D+Q  V I ++EGER M  D++ LG F++TGIPPAPRGVPQIEVTF+ID NGIL+
Sbjct: 453 FSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILH 512

Query: 693 VSA 701
           VSA
Sbjct: 513 VSA 515


>M28528-1|AAA28076.1|  288|Caenorhabditis elegans protein (
           C.elegans heat shockprotein 4 gene, 3' end. ).
          Length = 288

 Score = 90.6 bits (215), Expect = 9e-19
 Identities = 41/63 (65%), Positives = 51/63 (80%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILN 692
           F T +D+Q  V I ++EGER M  D++ LG F++TGIPPAPRGVPQIEVTF+ID NGIL+
Sbjct: 84  FPTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILH 143

Query: 693 VSA 701
           VSA
Sbjct: 144 VSA 146


>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 78.6 bits (185), Expect = 4e-15
 Identities = 39/64 (60%), Positives = 46/64 (71%), Gaps = 3/64 (4%)
 Frame = -2

Query: 254 GFXTHLMRRLRHSQVRGISIKLQEEERERRYNYVPEVSALEHD---IIEVDPDTKDMLKM 84
           G+ THLMRR+    VRGISIKLQEEERERR NY+PE+S ++      I+VD DT DMLK 
Sbjct: 52  GYITHLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKA 111

Query: 83  LDFN 72
             FN
Sbjct: 112 AGFN 115



 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = -3

Query: 358 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIA 254
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIA
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIA 51


>Z81113-10|CAB54300.1|  607|Caenorhabditis elegans Hypothetical
           protein F11F1.1 protein.
          Length = 607

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TF    D Q  + + V+EGER +   +  LG+  L  I P  RG   +++T ++D NGIL
Sbjct: 423 TFINSDDFQTSINVPVYEGERVLCSHNRQLGEISLP-IQPKRRGESVVDITLEVDYNGIL 481

Query: 690 NVSAI 704
             +A+
Sbjct: 482 QATAL 486


>Z81059-7|CAB54217.1|  607|Caenorhabditis elegans Hypothetical
           protein F11F1.1 protein.
          Length = 607

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 23/65 (35%), Positives = 36/65 (55%)
 Frame = +3

Query: 510 TFTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGIPPAPRGVPQIEVTFDIDANGIL 689
           TF    D Q  + + V+EGER +   +  LG+  L  I P  RG   +++T ++D NGIL
Sbjct: 423 TFINSDDFQTSINVPVYEGERVLCSHNRQLGEISLP-IQPKRRGESVVDITLEVDYNGIL 481

Query: 690 NVSAI 704
             +A+
Sbjct: 482 QATAL 486


>X07678-1|CAA30525.1|  487|Caenorhabditis elegans hsp6F protein.
          Length = 487

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +3

Query: 513 FTTYSDNQPGVLIQVFEGERAMTKDSNLLGKFELTGI 623
           F+T +D Q  V I+VF+GER M   + LLG+F L GI
Sbjct: 451 FSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGI 487


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 232 GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 140
           G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 652 GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AF077546-7|AAC26319.1|  534|Caenorhabditis elegans Hypothetical
           protein T08E11.8 protein.
          Length = 534

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 504 DSTFTTYSDNQPGVLIQVFEGERAMTKDSNLL 599
           + T+ +YSD +   LI+V E  + + KD N +
Sbjct: 40  NKTYISYSDKEDDTLIEVTEYNKRLVKDKNYI 71


>AF067608-4|AAK95863.2|  473|Caenorhabditis elegans Hypothetical
           protein B0511.13 protein.
          Length = 473

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 521 GGECRVCLVGMVVLRLMSVLVPNSAPVILSKAALYNFSHGSCPD*NRQ 378
           G  CR+C    ++L  +    P + P++L    LY  S   C   + Q
Sbjct: 178 GDGCRLCHEAELILEKIKSRNPKNRPIVLQHFPLYRKSDAECDQVDEQ 225


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 220 TRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 119
           TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,280,227
Number of Sequences: 27780
Number of extensions: 311321
Number of successful extensions: 961
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)