Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00154
(772 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 167 2e-40
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 112 1e-23
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 112 1e-23
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 110 4e-23
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 100 5e-20
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 98 2e-19
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 94 3e-18
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 93 7e-18
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 88 2e-16
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 82 1e-14
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 80 5e-14
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 77 5e-13
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 70 7e-11
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 68 2e-10
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 9e-10
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 66 9e-10
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 66 1e-09
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 65 2e-09
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 65 2e-09
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 62 1e-08
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 62 2e-08
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 60 6e-08
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 58 2e-07
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 58 3e-07
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 57 6e-07
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 55 2e-06
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 54 5e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 51 3e-05
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 49 1e-04
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 48 2e-04
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 47 5e-04
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 46 0.001
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 44 0.003
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 44 0.004
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 42 0.022
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 41 0.030
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 40 0.091
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 38 0.21
UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC pre... 36 1.5
UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613; ... 36 1.5
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.4
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 34 3.4
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 34 4.5
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 33 7.9
UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=... 33 7.9
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 7.9
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 33 7.9
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = +3
Query: 258 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 437
SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVVSGKL
Sbjct: 83 SVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKL 142
Query: 438 RGQRAKSMKFVDGLMIHSGDPCN 506
RGQRAKSMKFVDGLMIHSGDP N
Sbjct: 143 RGQRAKSMKFVDGLMIHSGDPVN 165
Score = 141 bits (342), Expect = 2e-32
Identities = 70/82 (85%), Positives = 76/82 (92%)
Frame = +1
Query: 10 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 189
MAV ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VL
Sbjct: 1 MAVQ-ISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVL 59
Query: 190 GEKGRRIRELTSVVQKRFNIPD 255
GEKGRRIRELT+VVQKRF P+
Sbjct: 60 GEKGRRIRELTAVVQKRFGFPE 81
Score = 100 bits (240), Expect = 3e-20
Identities = 45/63 (71%), Positives = 50/63 (79%)
Frame = +2
Query: 497 PLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 676
P+ YV+TA RHVLLRQGVLGIKVKIMLPWD GK GPKKP PDH+ + EPKDE +P P
Sbjct: 163 PVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDEILPTTP 222
Query: 677 TSE 685
SE
Sbjct: 223 ISE 225
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 112 bits (269), Expect = 1e-23
Identities = 56/81 (69%), Positives = 66/81 (81%)
Frame = +1
Query: 16 VNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGE 195
V +SKKRKF DGVF A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGE
Sbjct: 2 VTQMSKKRKFAVDGVFFAGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGE 61
Query: 196 KGRRIRELTSVVQKRFNIPDN 258
KG++I+ELTSVVQKRF +N
Sbjct: 62 KGKKIKELTSVVQKRFEFLEN 82
Score = 57.6 bits (133), Expect = 3e-07
Identities = 42/84 (50%), Positives = 45/84 (53%)
Frame = +3
Query: 258 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 437
SVEL AEKV RG AIAQAESLRYKL+GGLA+ L
Sbjct: 83 SVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM--------------------------L 116
Query: 438 RGQRAKSMKFVDGLMIHSGDPCND 509
QRAKSMKF DG +I SG P D
Sbjct: 117 CAQRAKSMKFKDGYLISSGQPVKD 140
Score = 57.6 bits (133), Expect = 3e-07
Identities = 27/52 (51%), Positives = 35/52 (67%)
Frame = +2
Query: 494 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEP 649
+P++ Y++ A RHVL RQGVLGIKVKIM WD +GK P PD + + P
Sbjct: 136 QPVKDYIDLAVRHVL-RQGVLGIKVKIMFNWDPKGKQSLTTPLPDLVTIQTP 186
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 112 bits (269), Expect = 1e-23
Identities = 52/87 (59%), Positives = 64/87 (73%)
Frame = +3
Query: 249 SRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 428
S + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+S
Sbjct: 81 SPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVIS 140
Query: 429 GKLRGQRAKSMKFVDGLMIHSGDPCND 509
GKLR RAKS K+ DG MIHSG P D
Sbjct: 141 GKLRAARAKSQKYADGFMIHSGQPTRD 167
Score = 107 bits (258), Expect = 2e-22
Identities = 50/75 (66%), Positives = 61/75 (81%)
Frame = +1
Query: 25 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 204
+SKK+K V DGVF AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GR
Sbjct: 6 LSKKKKLVADGVFYAELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGR 65
Query: 205 RIRELTSVVQKRFNI 249
RI ELTS++ KRF +
Sbjct: 66 RIHELTSLIVKRFKL 80
Score = 49.2 bits (112), Expect = 1e-04
Identities = 29/67 (43%), Positives = 41/67 (61%)
Frame = +2
Query: 494 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLE 673
+P + +++ A RHVL+RQGVLGIKVKIM + GP + PD + + E KDE +
Sbjct: 163 QPTRDFIDIAIRHVLMRQGVLGIKVKIMKD-PAANRFGP-RALPDAVKIAEAKDEDEVI- 219
Query: 674 PTSEVRS 694
P V+S
Sbjct: 220 PAPTVKS 226
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 110 bits (264), Expect = 4e-23
Identities = 49/87 (56%), Positives = 66/87 (75%)
Frame = +3
Query: 234 EAIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 413
+ + ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GC
Sbjct: 126 QRFNYKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGC 185
Query: 414 EVVVSGKLRGQRAKSMKFVDGLMIHSG 494
EV + GK++GQRAKSM F DG MI SG
Sbjct: 186 EVTIGGKIKGQRAKSMTFRDGYMIKSG 212
Score = 107 bits (256), Expect = 4e-22
Identities = 51/74 (68%), Positives = 63/74 (85%)
Frame = +1
Query: 25 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 204
+SKKR V DGVF AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGR
Sbjct: 56 LSKKRMMVRDGVFYAELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGR 115
Query: 205 RIRELTSVVQKRFN 246
RIRELT+ +Q+RFN
Sbjct: 116 RIRELTACLQQRFN 129
Score = 40.7 bits (91), Expect = 0.039
Identities = 23/48 (47%), Positives = 28/48 (58%)
Frame = +2
Query: 509 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 652
+V+TATRH LR G +G+ VKIM P Q + PD I V EPK
Sbjct: 218 FVDTATRHCHLRAGTIGVNVKIMRP---QSMIEEDEVLPDVITVIEPK 262
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 100 bits (239), Expect = 5e-20
Identities = 42/80 (52%), Positives = 61/80 (76%)
Frame = +3
Query: 258 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 437
S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +SGKL
Sbjct: 84 SLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAISGKL 143
Query: 438 RGQRAKSMKFVDGLMIHSGD 497
RG RA + K+ +G M+ SGD
Sbjct: 144 RGARASTSKYKEGYMVKSGD 163
Score = 81.8 bits (193), Expect = 2e-14
Identities = 37/83 (44%), Positives = 55/83 (66%)
Frame = +1
Query: 10 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 189
M +K R+ + G+F AELNE LTREL ++GY G EVR TP R+EIII A T+ +
Sbjct: 1 MKAQRCTKVRRIIETGLFYAELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFV 60
Query: 190 GEKGRRIRELTSVVQKRFNIPDN 258
GRR++E+ ++QKR+ + ++
Sbjct: 61 DNHGRRLQEVRMMIQKRWRLKED 83
Score = 49.2 bits (112), Expect = 1e-04
Identities = 23/49 (46%), Positives = 31/49 (63%)
Frame = +2
Query: 509 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 655
+V A H+ ++Q +GI+V IML D G +GPK+ QPD I V E KD
Sbjct: 168 FVTQAVGHIPMKQATIGIRVLIMLAQDPSGISGPKESQPDVIKVHEAKD 216
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 97.9 bits (233), Expect = 2e-19
Identities = 44/85 (51%), Positives = 62/85 (72%)
Frame = +3
Query: 255 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 434
+SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC+++VSGK
Sbjct: 93 ESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIVSGK 152
Query: 435 LRGQRAKSMKFVDGLMIHSGDPCND 509
L+GQRAKS+KF DG++IHSGD D
Sbjct: 153 LKGQRAKSVKFQDGVLIHSGDAVKD 177
Score = 56.4 bits (130), Expect = 7e-07
Identities = 24/49 (48%), Positives = 33/49 (67%)
Frame = +2
Query: 509 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKD 655
Y+NT V +QGV+GI+V+IMLP+D +G GP P PD I + EP +
Sbjct: 178 YINTGYATVETKQGVIGIQVRIMLPYDPEGVLGPNYPLPDRITILEPSE 226
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/72 (30%), Positives = 41/72 (56%)
Frame = +1
Query: 40 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 219
+F+ +G+ AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+
Sbjct: 21 RFMKNGLMNAELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQF 80
Query: 220 TSVVQKRFNIPD 255
+ +R +PD
Sbjct: 81 QHLAAQRLEVPD 92
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/57 (78%), Positives = 51/57 (89%)
Frame = +1
Query: 28 SKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 198
SKKR+FV DG+F+AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 6 SKKRQFVADGIFRAELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
Score = 60.1 bits (139), Expect = 6e-08
Identities = 35/77 (45%), Positives = 42/77 (54%)
Frame = +3
Query: 387 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLLPDMCFSDKEY*ESR 566
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N + S+
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 567 SKSCCRGTSKARTARRS 617
+SC GT A RS
Sbjct: 140 CRSCFPGTQAVTLALRS 156
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 93.1 bits (221), Expect = 7e-18
Identities = 39/88 (44%), Positives = 63/88 (71%)
Frame = +3
Query: 246 HSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 425
+S ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++
Sbjct: 92 YSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIII 151
Query: 426 SGKLRGQRAKSMKFVDGLMIHSGDPCND 509
SGKL+ QRAK+MKF G MI +G P ND
Sbjct: 152 SGKLKQQRAKTMKFKQGYMICTGQPKND 179
Score = 89.4 bits (212), Expect = 9e-17
Identities = 40/78 (51%), Positives = 58/78 (74%)
Frame = +1
Query: 25 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 204
I+KK+KFV DGVF AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G+
Sbjct: 18 INKKKKFVADGVFNAELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGK 77
Query: 205 RIRELTSVVQKRFNIPDN 258
+ +ELT +QKRF D+
Sbjct: 78 KHKELTQFLQKRFGYSDD 95
Score = 55.6 bits (128), Expect = 1e-06
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 2/55 (3%)
Frame = +2
Query: 494 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQ--GKNGPKKPQPDHILVTEPK 652
+P Y++ A RHV +QG++G+KVKIMLP++ K G K P PD++++ PK
Sbjct: 175 QPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAKKFGVKTPIPDNVIIHPPK 229
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 88.2 bits (209), Expect = 2e-16
Identities = 41/52 (78%), Positives = 45/52 (86%)
Frame = +3
Query: 354 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 509
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P D
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRD 81
Score = 63.7 bits (148), Expect = 5e-09
Identities = 26/60 (43%), Positives = 42/60 (70%)
Frame = +2
Query: 497 PLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 676
P++ Y+ + TRH LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 78 PVRDYIVSCTRHALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/55 (70%), Positives = 45/55 (81%)
Frame = +3
Query: 258 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 422
+VELYAEK R AIAQAESLR+KL+GGL VRRA YGVL F+MESG +GCEV+
Sbjct: 137 NVELYAEKFNNRVFYAIAQAESLRFKLLGGLVVRRAGYGVLSFVMESGTKGCEVI 191
Score = 56.4 bits (130), Expect = 7e-07
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = +1
Query: 151 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPDN 258
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF +N
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLEN 136
Score = 50.4 bits (115), Expect = 5e-05
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = +2
Query: 461 EVCRWTHDPLWRPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 610
EV W +P++ Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 189 EVIGWYIISSGQPVKDYINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 80.2 bits (189), Expect = 5e-14
Identities = 35/82 (42%), Positives = 55/82 (67%)
Frame = +3
Query: 255 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 434
++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA GCEV+V+GK
Sbjct: 88 KNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGK 147
Query: 435 LRGQRAKSMKFVDGLMIHSGDP 500
LR QRA++ KF +G +I +G P
Sbjct: 148 LRAQRARANKFKEGCLISTGHP 169
Score = 41.5 bits (93), Expect = 0.022
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +1
Query: 40 KFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIREL 219
K++ D + +AEL+EF +REL + GY+ + T +II + V+G+ R+ ++
Sbjct: 16 KYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKI 75
Query: 220 TSVVQKRF 243
++ RF
Sbjct: 76 EYLLAGRF 83
Score = 35.1 bits (77), Expect = 1.9
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = +2
Query: 497 PLQ*YVNTATRHVLLRQGVLGIKVKIMLP 583
P + ++ ATRH+ +RQGV+G+KV+I P
Sbjct: 169 PKRIFLAEATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 77.0 bits (181), Expect = 5e-13
Identities = 33/53 (62%), Positives = 43/53 (81%)
Frame = +2
Query: 494 RPLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPK 652
+P++ Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P PD++++ PK
Sbjct: 19 QPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPLPDNVVIHMPK 71
Score = 33.5 bits (73), Expect = 5.9
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = +3
Query: 444 QRAKSMKFVDGLMIHSGDPCND 509
QRAKSMKF DG M+ SG P +
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKE 23
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.7 bits (163), Expect = 7e-11
Identities = 35/55 (63%), Positives = 43/55 (78%), Gaps = 1/55 (1%)
Frame = +1
Query: 94 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV-VQKRFNIPD 255
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V + +PD
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILVRHHEAMELPD 70
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/91 (39%), Positives = 55/91 (60%)
Frame = +3
Query: 237 AIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 416
A ++S ++ ++ A++V L A A L + G R+A + LR +M +GA GCE
Sbjct: 70 ANKYSLENPQIDAQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCE 129
Query: 417 VVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 509
VV+SGKL G R++ KFVDG + HSG+P +
Sbjct: 130 VVISGKLTGARSRVEKFVDGYIKHSGNPVEE 160
Score = 60.9 bits (141), Expect = 3e-08
Identities = 25/72 (34%), Positives = 48/72 (66%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
++KFV DG KA ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR
Sbjct: 4 EKKFVNDGYVKASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIR 63
Query: 214 ELTSVVQKRFNI 249
+LT V ++++
Sbjct: 64 KLTRDVANKYSL 75
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +1
Query: 94 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 231
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 94 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 228
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.010
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 94 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 189
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 66.1 bits (154), Expect = 9e-10
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +3
Query: 243 QHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVV 422
Q ++ ++ E++ L A QA L L G+ RRA Y LR IM +GARG E+
Sbjct: 72 QFGLENPQIEVEEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIR 131
Query: 423 VSGKLRGQRAKSMKFVDGLMIHSGDP 500
+SGKL G+RAKS++F G + G+P
Sbjct: 132 LSGKLTGERAKSIRFYQGYLAKVGNP 157
Score = 65.7 bits (153), Expect = 1e-09
Identities = 28/72 (38%), Positives = 49/72 (68%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
+R F+ + V + ++EFL +EL GY G++++ TP+ +++II A V+G GRRIR
Sbjct: 4 ERYFIREAVREMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIR 63
Query: 214 ELTSVVQKRFNI 249
ELT +++K+F +
Sbjct: 64 ELTRILEKQFGL 75
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 65.7 bits (153), Expect = 1e-09
Identities = 25/77 (32%), Positives = 53/77 (68%)
Frame = +1
Query: 25 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 204
++ +++F+ DG+ + +++EF EL GY G++V TP+ ++I++ A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 205 RIRELTSVVQKRFNIPD 255
IR++T+ ++ RFN+ D
Sbjct: 61 NIRKITTELEDRFNLDD 77
Score = 50.0 bits (114), Expect = 6e-05
Identities = 26/65 (40%), Positives = 39/65 (60%)
Frame = +3
Query: 315 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A+ L L G R+A + + IMESGA G E+V+SGK+ G R++ KF G + H+G
Sbjct: 96 ADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLSGKVTGARSRVEKFNRGYVKHNG 155
Query: 495 DPCND 509
+P +
Sbjct: 156 EPAEE 160
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 64.9 bits (151), Expect = 2e-09
Identities = 32/46 (69%), Positives = 37/46 (80%)
Frame = +1
Query: 22 NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEII 159
+ISK+RKFV GVF A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 84 DISKRRKFVVGGVFYAGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 64.9 bits (151), Expect = 2e-09
Identities = 34/88 (38%), Positives = 50/88 (56%)
Frame = +3
Query: 237 AIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCE 416
A + +S ++ ++V A AE L L G R+A +R IMESGA GCE
Sbjct: 70 ATDYDIESPQVEVQQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCE 129
Query: 417 VVVSGKLRGQRAKSMKFVDGLMIHSGDP 500
V+V+GKL G R+++ KF +G + H G+P
Sbjct: 130 VIVAGKLTGSRSRTQKFTEGYIKHCGEP 157
Score = 58.8 bits (136), Expect = 1e-07
Identities = 24/72 (33%), Positives = 47/72 (65%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
++KF+ DGV + +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R
Sbjct: 4 EKKFITDGVRNVRVEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVR 63
Query: 214 ELTSVVQKRFNI 249
+LT + ++I
Sbjct: 64 QLTQDLATDYDI 75
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/62 (50%), Positives = 41/62 (66%)
Frame = +3
Query: 315 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A L L G RRA Y L IME+GA+GCE+ +SGKL +RA++ KFV G ++H+G
Sbjct: 95 ASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISGKLVSERARTEKFVAGTIVHTG 154
Query: 495 DP 500
DP
Sbjct: 155 DP 156
Score = 47.2 bits (107), Expect = 5e-04
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
+RKFV + + K + E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+
Sbjct: 4 ERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIK 63
Query: 214 ELTSVVQKRFNI 249
LT + K F I
Sbjct: 64 ALTEKL-KDFGI 74
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 61.7 bits (143), Expect = 2e-08
Identities = 29/90 (32%), Positives = 52/90 (57%)
Frame = +3
Query: 231 TEAIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARG 410
T A ++S ++ ++ ++V L + L G+ R+ + +R +M SGA+G
Sbjct: 67 TLATEYSVKNPQIEVKQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKG 126
Query: 411 CEVVVSGKLRGQRAKSMKFVDGLMIHSGDP 500
++VSGKL G+R+++ KF+DG M H G+P
Sbjct: 127 VAIIVSGKLSGERSRTEKFMDGYMKHCGEP 156
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/72 (30%), Positives = 43/72 (59%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
+R FVG+ V + ++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++
Sbjct: 3 ERTFVGENVSETLIDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVK 62
Query: 214 ELTSVVQKRFNI 249
ELT + +++
Sbjct: 63 ELTETLATEYSV 74
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 60.1 bits (139), Expect = 6e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +1
Query: 7 IMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 186
+M N+ +KFV G+ K EL+E+L EL GY G+ ++ P ++II R
Sbjct: 2 VMYGENVPVHKKFVQYGMLKTELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIA 61
Query: 187 LGEKGRRIRELTSVVQKRF 243
+G +GR IR + VQ+RF
Sbjct: 62 IGRRGRNIRRVEEEVQERF 80
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +3
Query: 315 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A L L G+ RRA YG LR IM +GA+G +++SGKL G RA++ KF++G + + G
Sbjct: 104 ARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILSGKLIGARARTEKFMEGAVKYCG 163
Query: 495 DP 500
+P
Sbjct: 164 EP 165
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 58.0 bits (134), Expect = 2e-07
Identities = 22/72 (30%), Positives = 48/72 (66%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
++ FV +G+ + ++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R
Sbjct: 3 EKDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVR 62
Query: 214 ELTSVVQKRFNI 249
+T ++ +F++
Sbjct: 63 AITQKLKNKFDL 74
Score = 55.2 bits (127), Expect = 2e-06
Identities = 26/62 (41%), Positives = 37/62 (59%)
Frame = +3
Query: 315 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A + L G+ RR Y +R IM +GA+G EV +SGK+RG R+ + KF DG + G
Sbjct: 95 AHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISGKIRGARSATAKFTDGYIKKCG 154
Query: 495 DP 500
+P
Sbjct: 155 EP 156
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/82 (30%), Positives = 54/82 (65%)
Frame = +1
Query: 10 MAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 189
M+V + K+ F+ + + +++E+L + GYS VE++ TP+ + +II A R+ +++
Sbjct: 1 MSVAKKNIKKYFLEQALTQVKVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAII 60
Query: 190 GEKGRRIRELTSVVQKRFNIPD 255
G +G+ I+++T V+++ F IP+
Sbjct: 61 GRRGQTIKQITKVLEEWFGIPN 82
Score = 53.6 bits (123), Expect = 5e-06
Identities = 33/73 (45%), Positives = 41/73 (56%)
Frame = +3
Query: 279 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 458
KV L A A L L G RRA Y LR IM +GA G +V VSGKLRG+RA+
Sbjct: 89 KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVSGKLRGERARF 148
Query: 459 MKFVDGLMIHSGD 497
K++ G + SG+
Sbjct: 149 EKYIAGKVYKSGN 161
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 56.8 bits (131), Expect = 6e-07
Identities = 25/72 (34%), Positives = 43/72 (59%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
KR F+ + K +++E+L ++ Y+GVEV TPI + +II A R ++G GR I+
Sbjct: 5 KRYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIK 64
Query: 214 ELTSVVQKRFNI 249
+L + +K F +
Sbjct: 65 QLAQIFEKVFGL 76
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +3
Query: 297 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 476
L A A L L G RRA + +R IM +GA G E+++SGKL +RA+ K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIISGKLTTERARYEKLKEG 150
Query: 477 LMIHSG 494
++ SG
Sbjct: 151 IVYKSG 156
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 54.8 bits (126), Expect = 2e-06
Identities = 30/74 (40%), Positives = 42/74 (56%)
Frame = +3
Query: 279 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKS 458
+V + L A A + L+ G+ RRA L IM +GARG E+V+SGKL QR ++
Sbjct: 85 EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISGKLTSQRHRT 144
Query: 459 MKFVDGLMIHSGDP 500
KF G + SG+P
Sbjct: 145 EKFTRGYVPKSGEP 158
Score = 47.2 bits (107), Expect = 5e-04
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +1
Query: 37 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 216
RK + G+ LNE+L R+L Y + TPI +++I+ A V+G KG I+
Sbjct: 6 RKVISQGLQYMMLNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKA 65
Query: 217 LTSVVQKRFNI 249
+ V+++ F I
Sbjct: 66 IAEVLEREFGI 76
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/72 (33%), Positives = 43/72 (59%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
KR F+ K ++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I+
Sbjct: 5 KRHFLQKAAIKVMVDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIK 64
Query: 214 ELTSVVQKRFNI 249
+L V++K F +
Sbjct: 65 QLAQVLEKFFGL 76
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/66 (45%), Positives = 36/66 (54%)
Frame = +3
Query: 297 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDG 476
L A A L L G RRA + +R IM SGA G EV+VSGKL +RAK K +G
Sbjct: 91 LNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSGKLTSERAKYEKLKEG 150
Query: 477 LMIHSG 494
+ SG
Sbjct: 151 TVYKSG 156
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1
Query: 94 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 234
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 51.2 bits (117), Expect = 3e-05
Identities = 25/60 (41%), Positives = 37/60 (61%)
Frame = +1
Query: 70 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 249
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Score = 38.3 bits (85), Expect = 0.21
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +3
Query: 345 GLAVRRACYGVLRFIMES-GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
G A RRA ++ IME A G ++ +SGKLRG R+ K G++ +G
Sbjct: 106 GTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAG 156
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/51 (43%), Positives = 30/51 (58%)
Frame = +3
Query: 357 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 509
R + LRF++ SG RGC + + G R +R K+ KF GL+ HSG ND
Sbjct: 158 RSIIFNTLRFLINSGVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNND 208
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 48.4 bits (110), Expect = 2e-04
Identities = 18/73 (24%), Positives = 43/73 (58%)
Frame = +1
Query: 31 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRI 210
K+RKF+ + V + + E++ +E G+ + ++ TP + I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 211 RELTSVVQKRFNI 249
+++T ++K++ I
Sbjct: 62 QQMTDTLEKKYGI 74
Score = 43.6 bits (98), Expect = 0.006
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +3
Query: 315 AESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A+ + L G + R+A L +++GA+G + +SGK+ G+RA+ KF+ G + +SG
Sbjct: 95 AKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSG 154
Query: 495 DP 500
+P
Sbjct: 155 EP 156
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 47.2 bits (107), Expect = 5e-04
Identities = 21/47 (44%), Positives = 31/47 (65%)
Frame = +3
Query: 357 RRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGD 497
RR +LR +ME+GA G E+++SGKLR +RA+ K G + +GD
Sbjct: 113 RRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGD 159
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/72 (30%), Positives = 38/72 (52%)
Frame = +1
Query: 34 KRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR 213
K F+ + K L+EFL + GY+G+E+ TP ++I A ++G G IR
Sbjct: 7 KSYFIDYSLKKVMLDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIR 66
Query: 214 ELTSVVQKRFNI 249
+L +++Q F +
Sbjct: 67 KLMTIMQTHFGL 78
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/81 (32%), Positives = 41/81 (50%)
Frame = +3
Query: 255 QSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGK 434
++ L ++ L A A L L G RRA + + IM++GARGC +++SGK
Sbjct: 80 ENPRLEVNEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSGK 139
Query: 435 LRGQRAKSMKFVDGLMIHSGD 497
+ G R + KF G + G+
Sbjct: 140 ISGPRHRVQKFQQGHIKFCGE 160
Score = 41.1 bits (92), Expect = 0.030
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +1
Query: 37 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 216
R F+ V + + E+L RE G+ G+E TP +++ + A + V+G +G+ I E
Sbjct: 9 RTFINRNVERHMVREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHE 68
Query: 217 LTSVVQKRFNI 249
L ++ F +
Sbjct: 69 LQYRLKSDFKL 79
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 44.4 bits (100), Expect = 0.003
Identities = 19/71 (26%), Positives = 40/71 (56%)
Frame = +1
Query: 37 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 216
+K + + K + EFL L++ GY E+ TP+ + I+I A R ++G KG ++E
Sbjct: 12 KKILEENKKKWMIKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKE 71
Query: 217 LTSVVQKRFNI 249
+++++ + +
Sbjct: 72 ISNILTTKLGV 82
Score = 42.3 bits (95), Expect = 0.013
Identities = 21/50 (42%), Positives = 31/50 (62%)
Frame = +3
Query: 345 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
G+ RR + +R +ME+GA+G E+VVSGKL +RA+ K G + G
Sbjct: 116 GVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIG 165
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +3
Query: 345 GLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
G+ RRA LR + E+ +G EV++SGKL +R++ K+ G++I +G
Sbjct: 104 GIRFRRAAIIALRQLQEANVQGAEVIISGKLTTERSRFEKYTTGIVIKAG 153
Score = 42.3 bits (95), Expect = 0.013
Identities = 18/75 (24%), Positives = 43/75 (57%)
Frame = +1
Query: 37 RKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRE 216
++ + D K + E+L L + Y ++ T + + I+I+A + ++G KG++++
Sbjct: 3 KRIIDDNKKKWMIKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKA 62
Query: 217 LTSVVQKRFNIPDNL 261
L +++ +FN+ DN+
Sbjct: 63 LADILKSKFNL-DNV 76
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 41.5 bits (93), Expect = 0.022
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 351 AVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSG 494
A RR L IM +GA G E+V++G+L GQR K+ +F G + +G
Sbjct: 108 AYRRLAQRYLETIMNAGAIGAEIVIAGRLSGQRGKTWRFKAGNLRKTG 155
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 41.1 bits (92), Expect = 0.030
Identities = 22/75 (29%), Positives = 44/75 (58%)
Frame = -3
Query: 512 RIIARVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 333
+++ ++RVDHE++ L G+ ++Q +N T T H ++++T+ +++ +T +L
Sbjct: 104 KVVGWLTRVDHETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQQL 163
Query: 332 VS*RFGLGDSAKATS 288
FGL DS+ TS
Sbjct: 164 GFQGFGL-DSSGQTS 177
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 39.5 bits (88), Expect = 0.091
Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 SRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 428
+++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ VS
Sbjct: 94 TKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQVS 153
Query: 429 GKLRG-QRAKSMKFVDG 476
G+L G + A+S F +G
Sbjct: 154 GRLNGAEMARSEMFKEG 170
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 38.3 bits (85), Expect = 0.21
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 1/43 (2%)
Frame = +3
Query: 351 AVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 476
A RRA + +MESGARG +V++SG+L G ++A++ K ++G
Sbjct: 130 AFRRAMKQAAQRVMESGARGVKVILSGRLGGAEQARTEKVLEG 172
>UniRef50_Q52188 Cluster: TraC precursor; n=9; root|Rep: TraC
precursor - Enterococcus faecalis (Streptococcus
faecalis)
Length = 545
Score = 35.5 bits (78), Expect = 1.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = +1
Query: 43 FVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIII 162
FVGDG F+ + EFL +L E+ G++V +TP+ + + +
Sbjct: 397 FVGDGEFEKKAGEFLQGQL-EENLEGLKVNITPVPANVFM 435
>UniRef50_Q6ZS94 Cluster: CDNA FLJ45717 fis, clone FELNG2001613;
n=1; Homo sapiens|Rep: CDNA FLJ45717 fis, clone
FELNG2001613 - Homo sapiens (Human)
Length = 237
Score = 35.5 bits (78), Expect = 1.5
Identities = 18/47 (38%), Positives = 19/47 (40%)
Frame = +1
Query: 532 CASQTRSTRNQGQNHVAVGPARQERPEEATTRPHPGNRAQGRARAPR 672
CAS RS R Q Q P P A RP PG+ APR
Sbjct: 114 CASSDRSLREQKQRRAGPDPTPSPAPPPAGPRPSPGSLGPSAPAAPR 160
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 311 PGRISKIQAYRRSRCTSCLLWCSPFHH 391
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 34.3 bits (75), Expect = 3.4
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Frame = +3
Query: 195 ERTQNP*AHFRSTEAIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYG 374
ER ++ + T QH R ++ + ++ L A + + L +A RRA G
Sbjct: 86 ERLRSELSKIVDTYKGQHKRVNINIV--EIRKPDLNAHLVGQQIAADLERRVAFRRAMRG 143
Query: 375 VLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 476
++ + +GA+G +VSG+L G A+ ++ +G
Sbjct: 144 AIQRVQRAGAKGVRTMVSGRLNGADIARKEQYTEG 178
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 33.9 bits (74), Expect = 4.5
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 297 LCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVD 473
L AI AE + KL R A +R M+SGA+G + VSG+L G A+S + +
Sbjct: 115 LNAIILAEQIAIKLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSE 174
Query: 474 GLM 482
G M
Sbjct: 175 GEM 177
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 33.1 bits (72), Expect = 7.9
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 249 SRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 428
+++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 429 GKLRG-QRAKSMKFVDG 476
G+L G + A+S ++ +G
Sbjct: 154 GRLGGAEMARSEQYKEG 170
>UniRef50_Q3EBB8 Cluster: Uncharacterized protein At3g06190.2; n=1;
Arabidopsis thaliana|Rep: Uncharacterized protein
At3g06190.2 - Arabidopsis thaliana (Mouse-ear cress)
Length = 295
Score = 33.1 bits (72), Expect = 7.9
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -2
Query: 222 SELTDSASFLSEHTLCPGGHNNDLRADGSD 133
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 7.9
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +2
Query: 371 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 475
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 33.1 bits (72), Expect = 7.9
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +3
Query: 222 FRSTEAIQHSRQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESG 401
FR+ + + + V L V + AI AE L +L +A RRA VL I
Sbjct: 103 FRAKNGVSPTAK-VALQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDR 161
Query: 402 ARGCEVVVSGKLRG 443
+G ++ VSG+L G
Sbjct: 162 VQGAKIQVSGRLNG 175
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 763,855,046
Number of Sequences: 1657284
Number of extensions: 16101651
Number of successful extensions: 55544
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 52185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55433
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 64615845515
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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