Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00154
(772 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28) 161 4e-40
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 36 0.027
SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7) 31 1.0
SB_5097| Best HMM Match : GARS_A (HMM E-Value=0) 31 1.0
SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012) 31 1.4
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 29 3.1
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014) 29 4.2
SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68) 29 4.2
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31) 29 4.2
SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 4.2
SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_56796| Best HMM Match : CITED (HMM E-Value=1.2) 28 7.3
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5) 28 7.3
SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027) 28 7.3
SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038) 28 7.3
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3) 28 7.3
SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8) 28 7.3
SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_9870| Best HMM Match : GspM (HMM E-Value=1.9) 28 7.3
SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8) 28 9.6
SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
>SB_29492| Best HMM Match : Ribosomal_S3_C (HMM E-Value=1.8e-28)
Length = 240
Score = 161 bits (392), Expect = 4e-40
Identities = 76/81 (93%), Positives = 80/81 (98%)
Frame = +3
Query: 258 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 437
SVELYAEKVATRGLCAIAQ ESLRYKLIGGLAVRRACYGVLRFIMESGA+GCEVVVSGKL
Sbjct: 83 SVELYAEKVATRGLCAIAQCESLRYKLIGGLAVRRACYGVLRFIMESGAKGCEVVVSGKL 142
Query: 438 RGQRAKSMKFVDGLMIHSGDP 500
RGQRAKSMKFVDGLM+H+G+P
Sbjct: 143 RGQRAKSMKFVDGLMVHAGEP 163
Score = 143 bits (346), Expect = 2e-34
Identities = 69/77 (89%), Positives = 74/77 (96%)
Frame = +1
Query: 25 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 204
ISKKRKFV DG+FKAELNEFLTRELAEDGYSGVEVRVTPIR+EIII+ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGLFKAELNEFLTRELAEDGYSGVEVRVTPIRTEIIILATRTQNVLGEKGR 64
Query: 205 RIRELTSVVQKRFNIPD 255
RIRELTSVVQKRF P+
Sbjct: 65 RIRELTSVVQKRFGFPE 81
Score = 100 bits (240), Expect = 1e-21
Identities = 45/63 (71%), Positives = 49/63 (77%)
Frame = +2
Query: 497 PLQ*YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 676
P YV+TA RHV LRQGVLGIKVKIMLPWD GK GPKKP PD + + EPKDE VP +P
Sbjct: 163 PTTHYVDTAVRHVYLRQGVLGIKVKIMLPWDPTGKTGPKKPLPDQVSIVEPKDEVVPAQP 222
Query: 677 TSE 685
TSE
Sbjct: 223 TSE 225
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 36.3 bits (80), Expect = 0.027
Identities = 17/30 (56%), Positives = 17/30 (56%)
Frame = +1
Query: 577 VAVGPARQERPEEATTRPHPGNRAQGRARA 666
VA GPAR PE TRPHPG GR A
Sbjct: 107 VAAGPARITSPEPPATRPHPGRVEAGRRLA 136
>SB_14482| Best HMM Match : Cornifin (HMM E-Value=3.7)
Length = 301
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 589 PARQERPEEATTRPHPGNRAQGRARA 666
PAR PE TRPHPG GR A
Sbjct: 42 PARVTSPEPPATRPHPGRVEAGRRLA 67
>SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)
Length = 893
Score = 31.1 bits (67), Expect = 1.0
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +3
Query: 399 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDTSTLL 524
G G +V+ KL G+ + F DG I + P D TLL
Sbjct: 183 GDAGSTIVIEEKLEGEEFSVLAFTDGKTIAAMPPAQDHKTLL 224
>SB_27312| Best HMM Match : Pox_A32 (HMM E-Value=0.012)
Length = 1115
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 589 PARQERPEEATTRPHPGNRAQGRARA 666
PAR PE TRPHPG GR A
Sbjct: 537 PARITSPEPPATRPHPGRVEAGRRLA 562
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRA 660
A AR PE TRPHPG GRA
Sbjct: 1497 AARDARITSPEPPATRPHPGRVEAGRA 1523
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 62 SRQNSMSSSLGSWPRTATPAWKCGSLPSARRSLLWPPGH-RVCSERKDAESVSSLP*Y 232
+R+ ++ +L + P T +CG + +AR L+ P H R + V SLP Y
Sbjct: 272 TRKMMLTRALSTTPSTTPELRRCGGVLTAREGLIMSPNHPRPYPSDTHCKWVISLPSY 329
>SB_48415| Best HMM Match : Pox_A32 (HMM E-Value=0.014)
Length = 988
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 547 RSTRNQGQNHVAVGPA--RQERPEEATTRPHPGNRAQGRARA 666
+ R + VA PA R PE TRPHPG GR A
Sbjct: 801 KQRREPARTPVAALPAAARVTSPEPPATRPHPGRVEAGRRLA 842
>SB_3270| Best HMM Match : MMPL (HMM E-Value=0.68)
Length = 401
Score = 29.1 bits (62), Expect = 4.2
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +2
Query: 428 WQAAWSTCQINEVCRWTHDPLW 493
W+ AW+ C + E +T++P W
Sbjct: 76 WKQAWTPCSLQETTIYTNNPPW 97
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 742 ILSDSGDRLRQRRGREGAHFAGRLEGHGL 656
+LS +GD +R GRE HF + HGL
Sbjct: 769 VLSSNGDFIRSFGGRESMHFRYCVYSHGL 797
>SB_51602| Best HMM Match : Glyco_hydro_38C (HMM E-Value=1.1e-31)
Length = 976
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 422 CIWQAAWSTCQINEVCRWTHDPLWRP 499
C W + W + E WTH P RP
Sbjct: 185 CRWLSQWKQSEEEESVLWTHSPARRP 210
>SB_42203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +2
Query: 287 YSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPFHHGIWCPW 409
Y+W L + P + ++ Y R + L C+P + W W
Sbjct: 4 YNWWLAWNPALLCLMRQYNRWLAWNPALLCNPRQYNRWLAW 44
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 550 STRNQGQNHVAVGPARQERPEEATTRP 630
+++N + H + PA+QE+PE + +P
Sbjct: 162 TSKNTSRTHKIIAPAKQEKPERYSRKP 188
>SB_7014| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 589 PARQERPEEATTRPHPGNRAQGRARA 666
P R PE TRPHPG GR A
Sbjct: 185 PPRITSPEPPATRPHPGRVEAGRRLA 210
>SB_59749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1091
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 820 AARDARITSPEPPATRPHPGRVEAGRRLA 848
>SB_56796| Best HMM Match : CITED (HMM E-Value=1.2)
Length = 431
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
Length = 417
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 168 AARDARITSPEPPATRPHPGRVEAGRRLA 196
>SB_15943| Best HMM Match : Pox_A32 (HMM E-Value=0.027)
Length = 804
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 592 ARQERPEEATTRPHPGNRAQGRARA 666
AR PE TRPHPG GR A
Sbjct: 604 ARVTSPEPPATRPHPGRVEAGRRLA 628
>SB_15117| Best HMM Match : Pox_A32 (HMM E-Value=0.038)
Length = 771
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 386 AARDARITSPEPPATRPHPGRVEAGRRLA 414
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 604 RPEEATTRPHPGNRAQGRARA 666
RPE TRPHPG GR A
Sbjct: 546 RPEPPATRPHPGRVEAGRRLA 566
>SB_1260| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.3)
Length = 220
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 42 AARDARITSPEPPATRPHPGRVEAGRRLA 70
>SB_58633| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=2.8)
Length = 599
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 425 AARDARITSPEPPATRPHPGRVEAGRRLA 453
>SB_37846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 284 AARDARITSPEPPATRPHPGRVEAGRRLA 312
>SB_19127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1492
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 592 ARQERPEEATTRPHPGNRAQGRARA 666
AR PE TRPHPG GR A
Sbjct: 1351 ARITSPEPPATRPHPGRVGAGRRLA 1375
>SB_9870| Best HMM Match : GspM (HMM E-Value=1.9)
Length = 522
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 592 ARQERPEEATTRPHPGNRAQGRARA 666
AR PE TRPHPG GR A
Sbjct: 181 ARVTSPEPPATRPHPGRVEAGRRLA 205
>SB_5898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = +1
Query: 580 AVGPARQERPEEATTRPHPGNRAQGRARA 666
A AR PE TRPHPG GR A
Sbjct: 781 AAHDARITSPEPPATRPHPGRVEAGRRLA 809
>SB_45789| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
Length = 519
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 684 SLVGSRGTGSSLGSVTRMWSGCGFFGPFLPCW 589
S+ S G GSSLGS+ R W P W
Sbjct: 215 SIASSLGLGSSLGSMGRDWGRMSTNSPSFQSW 246
>SB_23541| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +1
Query: 592 ARQERPEEATTRPHPGNRAQGRARA 666
AR PE TRPHPG GR A
Sbjct: 792 ARITSPEPPATRPHPGRVEAGRRLA 816
>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1929
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 557 GIKVKIMLPWDQQGKNGPKKPQ-PDHILVTEPKDEPVPLEPTSEVRS 694
G+K+K+ML D+ G + P P+ P P + P E S +S
Sbjct: 1628 GLKIKLMLKKDRSGGSSPVSPRSPSPCEPRLPLESRSPFESNSSFQS 1674
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,950,274
Number of Sequences: 59808
Number of extensions: 522081
Number of successful extensions: 1754
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1748
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -