Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00151
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BKD7 Cluster: Chromosome undetermined scaffold_112, w...    35   2.0  
UniRef50_UPI000155C8D6 Cluster: PREDICTED: similar to novel KRAB...    34   3.5  
UniRef50_A7TUJ0 Cluster: DNA primase; n=1; Aggregatibacter actin...    34   4.6  

>UniRef50_A0BKD7 Cluster: Chromosome undetermined scaffold_112,
           whole genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_112,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 587

 Score = 35.1 bits (77), Expect = 2.0
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -2

Query: 754 AVYADKQ*LRLVTFQITLPEFFTLPVTFVTSKQVRFRW*IHT-FRSPRFFRNKCATISYR 578
           +VY  +Q L  +   I     F +P+ ++   +V F W   T FR PRFF    A I+  
Sbjct: 423 SVYHAEQYLSFIILLIAAMALFLVPILYLIRNRV-FEWKDMTEFRQPRFFCGSAAVIATL 481

Query: 577 CLV 569
           C+V
Sbjct: 482 CVV 484


>UniRef50_UPI000155C8D6 Cluster: PREDICTED: similar to novel KRAB
           box containing protein; n=1; Ornithorhynchus
           anatinus|Rep: PREDICTED: similar to novel KRAB box
           containing protein - Ornithorhynchus anatinus
          Length = 538

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +2

Query: 593 RTFVSEKARRTERVYLPPKTHLFRCYECN--WESEELW*CYLECHESKLLFVCVDCD 757
           + FV++ ARR  +     K  LF+C +C+  +E+E L   ++ CH    +F C  C+
Sbjct: 370 KVFVTQSARRMHKDCHGRKPDLFQCTKCSCFYETEHLRNLHMSCHYDD-VFKCPHCE 425


>UniRef50_A7TUJ0 Cluster: DNA primase; n=1; Aggregatibacter
           actinomycetemcomitans|Rep: DNA primase - Actinobacillus
           actinomycetemcomitans (Haemophilusactinomycetemcomitans)
          Length = 319

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 16/34 (47%), Positives = 24/34 (70%)
 Frame = +2

Query: 434 YTVYTFVMFFNLSFLVFSPRLLPTSIPVSTSRVK 535
           Y  + F++  NL+FL F  R +P+SIPV TSR++
Sbjct: 270 YICHNFILAQNLTFLTFI-RNVPSSIPVITSRIR 302


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,852,222
Number of Sequences: 1657284
Number of extensions: 10345558
Number of successful extensions: 25759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25748
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)