Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00151
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)                  29   3.2  
SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)                        29   5.6  
SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)                28   7.4  
SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)                 28   7.4  

>SB_48575| Best HMM Match : CARD (HMM E-Value=5.3e-19)
          Length = 618

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/83 (25%), Positives = 40/83 (48%)
 Frame = +2

Query: 452 VMFFNLSFLVFSPRLLPTSIPVSTSRVKLEVLLLPKLFKNKASI*DRRTFVSEKARRTER 631
           V+F  LS  V  P+L    I +ST +  + V+ LP+L+K+  ++ +  T++     ++  
Sbjct: 368 VVFVCLSG-VHLPKLQEVVIKLSTQQANIIVICLPQLYKDCINLANDITYIVLNVEQSSE 426

Query: 632 VYLPPKTHLFRCYECNWESEELW 700
           V++  +      YE   E    W
Sbjct: 427 VWMGSELVQLVYYESLLELSVKW 449


>SB_9407| Best HMM Match : DCX (HMM E-Value=2.6)
          Length = 306

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 730 LRLVTFQITLPEFFTLPVTFVTSKQVRF 647
           LR  ++ + L E FT+PV+ V+S+Q  F
Sbjct: 122 LRATSYNVKLTECFTVPVSVVSSEQPAF 149


>SB_59027| Best HMM Match : UPAR_LY6 (HMM E-Value=0.019)
          Length = 318

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 618 GERNVCIYHLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 743
           GE N+  Y  ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 103 GEANMRFYG-QQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


>SB_59026| Best HMM Match : Attractin (HMM E-Value=8.9)
          Length = 159

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 618 GERNVCIYHLKRTCLDVTNVTGRVKNSGNVIWNVTSLSYCLS 743
           GE N+  Y  ++ C  VT VT RVK+ G    + +  S C+S
Sbjct: 103 GEANMRFYG-QQLCAAVTLVTERVKDDGTSTTSTSCNSQCIS 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,835,383
Number of Sequences: 59808
Number of extensions: 358190
Number of successful extensions: 993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)