Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00151
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g46696.1 68414.m05216 hypothetical protein slight similarity ...    29   2.6  
At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR cla...    28   6.0  
At4g08850.2 68417.m01455 leucine-rich repeat family protein / pr...    28   6.0  
At4g08850.1 68417.m01454 leucine-rich repeat family protein / pr...    28   6.0  
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR...    28   8.0  
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR...    28   8.0  

>At1g46696.1 68414.m05216 hypothetical protein slight similarity to
           maebl (GI:20087019)[Plasmodium falciparum].
          Length = 616

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 599 FVSEKARRTERVYLPPKTHLFRCYECNWESEEL 697
           FVSE A RT +V  PP +H F  +  N+  ++L
Sbjct: 154 FVSEWAARTVKVSTPPVSHTFAAHFSNFCRQDL 186


>At5g38350.1 68418.m04628 disease resistance protein (NBS-LRR
           class), putative domain signature NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 833

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 512 PVSTS-RVKLEVLLLPKLFKNKASI*DRRTFVSEKARRTERV 634
           P+ST+ R K  VLL+ K+  +K    DRRT V  + R  +++
Sbjct: 736 PLSTTLRFKACVLLVKKIDNDKEEAADRRTTVIPRIRENDKI 777


>At4g08850.2 68417.m01455 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1009

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 642 HLKRTCLDVTNVTGRVKNSGNVIWNVTSLS 731
           +L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 239 NLRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


>At4g08850.1 68417.m01454 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 642 HLKRTCLDVTNVTGRVKNSGNVIWNVTSLS 731
           +L+  CLD  N+TG++ +S   + NVT L+
Sbjct: 239 NLRELCLDRNNLTGKIPSSFGNLKNVTLLN 268


>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 514 RDAGRKKARGENKKGK-IEKHNKSINCVSYTFLTISLVRRIL*LIQYLAQMTLLTGRRFM 338
           R AG ++    +K  + I +HN    CV   FL +S VRRI     + A  T+L+  +F+
Sbjct: 502 RKAGERRRLWNHKDIRDILEHNTGTECVRGIFLNMSEVRRIK---LFPAAFTMLSKLKFL 558


>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1049

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 514 RDAGRKKARGENKKGK-IEKHNKSINCVSYTFLTISLVRRIL*LIQYLAQMTLLTGRRFM 338
           R AG ++    +K  + I +HN    CV   FL +S VRRI     + A  T+L+  +F+
Sbjct: 502 RKAGERRRLWNHKDIRDILEHNTGTECVRGIFLNMSEVRRIK---LFPAAFTMLSKLKFL 558


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,474,764
Number of Sequences: 28952
Number of extensions: 233862
Number of successful extensions: 553
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)