Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00150
         (503 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.15 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   0.78 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.6  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.15
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 66  SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 176
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.2 bits (50), Expect = 0.78
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +2

Query: 62  SFRHYRKCQS*NPRQGRYSSRPTTSHLCRETIRRWPHS 175
           S +H  KC +       +SS P  +H CR     W HS
Sbjct: 162 SVKHVAKCAT------DFSSWPYDTHRCRINFGSWVHS 193


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +3

Query: 60   EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 239
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 931  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 990

Query: 240  IEPS 251
              PS
Sbjct: 991  SVPS 994


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +3

Query: 60   EASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGT 239
            ++ DT E  K  +Q KEG     Q+  F G  L     + +       T+ ++     G 
Sbjct: 927  KSQDTTEVTKYILQYKEGDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGR 986

Query: 240  IEPS 251
              PS
Sbjct: 987  SVPS 990


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 68  GSFHLQCNGLPRKGFDEY 15
           G+  +Q    P KGF+EY
Sbjct: 394 GTLSVQPQANPVKGFEEY 411


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,635
Number of Sequences: 438
Number of extensions: 2890
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)